Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1999X
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   124   1e-29
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    30   0.30 
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          30   0.30 
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    28   1.2  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   2.8  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   4.9  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   4.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.9  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   6.5  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    25   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.6  
SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.6  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    25   8.6  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  124 bits (299), Expect = 1e-29
 Identities = 62/96 (64%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
 Frame = +2

Query: 236 GYRDPSKKVFLAQKTMIARCNRVGKPVICATQMLESMVKKPRPTRAEISDVANAILDGAD 415
           G   P+ +VF+AQK MIA+CN  GKPV CATQMLESM   PRPTRAE+SDV NA+LDGAD
Sbjct: 275 GIEIPASQVFVAQKMMIAKCNIAGKPVACATQMLESMTYNPRPTRAEVSDVGNAVLDGAD 334

Query: 416 CVMLSGDTAKGDYPVECVHTMA-ICKEAEAVIGTGN 520
            VMLSG+T KG YPVE V  MA   + AEA I  G+
Sbjct: 335 LVMLSGETTKGSYPVEAVTYMAETARVAEASIPYGS 370



 Score =  115 bits (277), Expect = 5e-27
 Identities = 57/82 (69%), Positives = 66/82 (80%)
 Frame = +3

Query: 3   AVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGILGEKGKNIKIISKIENHQGMVN 182
           A+SEKDK+DL FGV+ GVDMIFASFIR    +  IR +LGE+GKNIKII KIEN QG+ N
Sbjct: 197 ALSEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREVLGEEGKNIKIICKIENQQGVNN 256

Query: 183 LDEIIAESDGIMVARGDLGIEI 248
            D I+  +DGIMVARGDLGIEI
Sbjct: 257 FDSILDVTDGIMVARGDLGIEI 278


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -3

Query: 519 LPVPITASASLQMAMV*THSTG*SPLAVSPESITQSAPSRMALATS--EISALVGRGFLT 346
           +PV I  S+S   A   T ST  S   VS  ++T S+PS ++  TS   IS+ +     T
Sbjct: 104 IPVDIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVST 163

Query: 345 MDSSI*VAQITGFPTRL 295
             SS      +GF T L
Sbjct: 164 --SSFTSLSSSGFSTVL 178


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 333 CWNPWLRSPVPPEPRSLTWPTPSSTELTA 419
           C NP  R   P + R++TW  PS TE T+
Sbjct: 259 CLNPACRFIHPTKSRNMTWRPPSKTEETS 287


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 454 IVALGSIPGEHHAVSSVEDGVGHVRDLGSGGTGLLNH-GFQHLSRTDHWFSNPIASGDHG 278
           IV    +    HA    E+   +++D+GS     LNH      S+T   +  PI++ D  
Sbjct: 77  IVFRSKVVSRRHAQIFYENNTWYIQDMGSSSGTFLNHVRLSPPSKTSKPY--PISNNDIL 134

Query: 277 LLGEEYLFG 251
            LG +Y  G
Sbjct: 135 QLGADYRGG 143


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 21  KSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 119
           K +LLFGV+ G D+IF   +       EIR  L
Sbjct: 341 KYELLFGVQSGGDLIFVPTVSLTIIQSEIRNRL 373


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = -3

Query: 585 GDGSRVRGIDRRLHLGHKVIEELPVPITASASLQMAMV*THSTG*SPLAVSPESITQSAP 406
           G  + +R   R      + ++  P+   AS+     +    +T  +PLA SP     S+P
Sbjct: 8   GRANELRTPGRANSSSREAVDSSPLFFPASSPGSTRLTTPRTTARTPLASSPLLFESSSP 67

Query: 405 SRMALATSEISALVGRGFLTMDSS 334
                 +S    L  R  L +DSS
Sbjct: 68  GPNIPQSSRSHLLSQRNDLFLDSS 91


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 597 RLHRGDGSRVRGIDRRLHLGHKVIEELPVPITASASLQMAMV*THST 457
           ++HR     VR +D+R  L  +  ++LPV    S+ +++    +HS+
Sbjct: 45  KIHRSCTRWVRNMDKRKGLLDEKDKQLPVTHVGSSFVELGQALSHSS 91


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = -3

Query: 507  ITASASLQMAMV*THSTG*SPLAVSPESITQSAPSRMALA--TSEISALVGRGFLT--MD 340
            +T S++  +A      +  S +AV+  S+T S+ S +A A  T   ++ V    +T  + 
Sbjct: 1022 VTDSSTSSVATASATDSSTSSIAVA--SVTGSSTSSVATASATDSSTSSVATASITGSLS 1079

Query: 339  SSI*VAQITGFPT 301
            SSI  A +TG PT
Sbjct: 1080 SSIATASVTGSPT 1092


>SPBC19G7.06 |mbx1||MADS-box transcription factor
          Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 1  PQSPRRTSRTCSSASNKAL 57
          P SPRR+ +  S A NKAL
Sbjct: 11 PSSPRRSIQRISDAKNKAL 29


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 370 SGGTGLLNHGFQHLSRTDHWFSNPIASGD-HGLL 272
           + G   + HGF  L++T H  S P+   D HG++
Sbjct: 182 AAGVSCVKHGFLELAQTSHQ-SGPVTYHDYHGIV 214


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 127  FSPRMPRISCSAAPLRMNDA 68
            FSPRM  ++ S +PL MN A
Sbjct: 1588 FSPRMGPVNNSGSPLAMNAA 1607


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 335 LESMVKKPRPTRAEISDVANAILDGADC 418
           L+  ++K R T   I D+A   LD A C
Sbjct: 451 LKENIRKQRTTSTAIRDIAIKFLDDAKC 478


>SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 110

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 502 SFSLLANGHGVNTLDRIVALGSIPGEHHAVSSVEDGVGHVRDLGSGGTGLLNHGFQ 335
           S S+   G  V+T        S+PG+   V++   G G + DL +  + +L+  FQ
Sbjct: 15  SSSIFVWGSNVSTCPAGDLALSMPGKSDVVTTKLTGAGSIDDLSTQMSRILSKKFQ 70


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 326 TQMLESMVKK-PRPTRAEISDVANAILDGADCVMLSGDTAKGDYPVECVHTMAICKEAEA 502
           T  L++ VK  P PT+  +  V     D  D V         ++P++    +A+ K  EA
Sbjct: 296 TVPLDADVKALPEPTKITVPTVQGNYRDFYDAVFEEILKKANEFPIKSDQVLAVEKIMEA 355

Query: 503 VIGTGNSSMTL 535
              +  SS ++
Sbjct: 356 AYKSSESSSSI 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,437
Number of Sequences: 5004
Number of extensions: 51331
Number of successful extensions: 177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)