Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1999X
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.1  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   5.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.4  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 436 YCQGRLSCRVCSHHGHLQ 489
           Y  GR+SC + S H +L+
Sbjct: 216 YVYGRISCVIASRHRNLE 233


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 344 WIPAFESHRSLVFQPD 297
           WIPAF  HR     P+
Sbjct: 397 WIPAFAIHRDSAIYPN 412


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  DKSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 119
           D  D L+GV+ GVD I    + N   +H+ R I+
Sbjct: 118 DACDRLWGVDTGVDDI----LGNNTVIHQPRIII 147


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 488 CKWPWCEHTRQD 453
           CKWP CE   +D
Sbjct: 283 CKWPGCEVICED 294


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 81  RNGAALHEIRGILGEKGKNIKIISKIENHQGMVNLDEIIAESDGIM 218
           R+    HE++ +       IK+I++ EN +        I +  G+M
Sbjct: 37  RSNMTFHELKKLRDSSEARIKLINEEENFRNYGCFLACIWQQTGVM 82


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 433 GYCQGRLSCRVCSHHGHLQGG*SCNRHRQLFNDLVSEVKPPID 561
           G+  G L C++ +  G L G  +   +  +  D  S +  P+D
Sbjct: 112 GFALGNLGCQIFAVIGSLTGIGAAITNAAIAYDRYSTIARPLD 154


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/42 (21%), Positives = 17/42 (40%)
 Frame = -1

Query: 485 KWPWCEHTRQDSRPWQYPRRASRSXXXXXXXXXXXXXXLWWD 360
           KW    + ++  R W  PR ++++              +WWD
Sbjct: 34  KWVVYNNIKR-KRSWSRPRESAQTTSKAGIHRKKVLLLVWWD 74


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/39 (20%), Positives = 14/39 (35%)
 Frame = -1

Query: 476 WCEHTRQDSRPWQYPRRASRSXXXXXXXXXXXXXXLWWD 360
           W  +  +  R W  PR  +++              +WWD
Sbjct: 35  WVVNNIKRKRWWSRPREPAQTTSKAGIHRKKVLLSVWWD 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,933
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)