Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1998X
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    39   5e-04
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    29   0.37 
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    27   1.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.9  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   4.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.9  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   7.9  

>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = +1

Query: 52  LKYLDLSFNSINLAHDGCFEHLSALNELVLEANAMAVLTRDTFRGLGNLTRLDLRSNKLS 231
           L YLDLSFN+I    +    HL  L  L    N +  +  +   GL  LT L+L  NK+ 
Sbjct: 106 LTYLDLSFNNIKTIRN--INHLKGLENLFFVQNRIRRI--ENLEGLDRLTNLELGGNKIR 161

Query: 232 MIGDL 246
           +I +L
Sbjct: 162 VIENL 166


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 25/76 (32%), Positives = 36/76 (47%)
 Frame = +1

Query: 4   NKLQEIQRDVFVELPALKYLDLSFNSINLAHDGCFEHLSALNELVLEANAMAVLTRDTFR 183
           N+L EI      ELP L  L+L+ N I          LS L  LVL  N +  L+     
Sbjct: 366 NELTEIPY-ALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLS--GLE 422

Query: 184 GLGNLTRLDLRSNKLS 231
            + +L +LD+R N ++
Sbjct: 423 NVPSLEKLDIRDNSIT 438


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 43  LPALKYLDLSFNSIN-LAHDGCFEHLSALNELVLEANAMAVLTRDTFRGLGNLTRLDLRS 219
           + AL  L +SF S + L+H G  EH   +  L+L++  +A    + +     L +L L S
Sbjct: 192 ISALAELSISFLSYSILSHYGALEHWKNMLSLLLQSYELAETEPEFYASFLELFKLQLSS 251


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 103  CFEHLSALNELVLEANAMAVLTRDTFRGLGNLTRLDLRSNKLSMI 237
            CF+HL +L  L   +     LT D F  L N   L+L  + LS I
Sbjct: 3740 CFKHLVSLQSLKSISRTQVDLTNDEFLNLMNFV-LNLFDSLLSSI 3783


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = +1

Query: 1   ENKLQEIQRDVFVELPALKYLDLSFNSINLAHDGCFEHLSALNELVLEANAMAVLTRDTF 180
           EN+L  +    F  L  L+YLD+S+N +          L  L EL +++N +  L  D  
Sbjct: 655 ENRLSSLTS--FSNLLNLQYLDISYNQLEDLTG--LSSLIHLRELKVDSNHLWSL--DGI 708

Query: 181 RGLGNLTRLDLRSNKL 228
           + L  L +L   +N++
Sbjct: 709 QHLDGLLKLSACNNRI 724


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 363  FQSSTVSVATPSRRKPSPICISTHCCLTAA 274
            FQ+S +S        P  I +S H CLTA+
Sbjct: 1747 FQNSELSRLQTKMHIPGVIELSNHLCLTAS 1776


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 330 LALLQKLSMTGNKLKSINEGLLEGVRGLNLLDLRNNQLEYFSEDTVKPI 476
           LAL + +SMT  +L+ +   L E    +N+L  ++       E + +P+
Sbjct: 294 LALKEAVSMTSEQLRVLEHLLSECSHEINVLSQQSKNFNGVFESSYQPL 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,145
Number of Sequences: 5004
Number of extensions: 22166
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)