Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1998X
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    40   1e-05

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 28/81 (34%), Positives = 37/81 (45%)
 Frame = +1

Query: 4   NKLQEIQRDVFVELPALKYLDLSFNSINLAHDGCFEHLSALNELVLEANAMAVLTRDTFR 183
           N L  I   +F +L  L+ LDL  NSI+      F  L  L+ L L  N +  +    F 
Sbjct: 345 NMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFN 404

Query: 184 GLGNLTRLDLRSNKLSMIGDL 246
           GL  L RL L  N ++ I  L
Sbjct: 405 GLFVLNRLTLSGNAIASIDPL 425



 Score = 38.3 bits (85), Expect = 4e-05
 Identities = 25/81 (30%), Positives = 41/81 (50%)
 Frame = +1

Query: 4    NKLQEIQRDVFVELPALKYLDLSFNSINLAHDGCFEHLSALNELVLEANAMAVLTRDTFR 183
            N L+E+Q  VF+    ++ L ++ + I    +  F  L+ L  L LE N +  L    F 
Sbjct: 804  NVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFE 863

Query: 184  GLGNLTRLDLRSNKLSMIGDL 246
             L +L  L L++N +  IG+L
Sbjct: 864  RLSHLRELYLQNNLIGFIGNL 884



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 306 ISERAFDGLALLQKLSMTGNKLKSINEGLLEGVRGLNLLDLRNNQLEYFSEDTVKPI 476
           + E  F GL  L  L+++ N L  I+  + + +  L +LDLRNN ++    +   P+
Sbjct: 326 VDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPL 382



 Score = 32.3 bits (70), Expect = 0.003
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 306 ISERAFDGLALLQKLSMTGNKLKSINEGLLEGVRGLNLLDLRNNQL 443
           +  + F+GL +L +L+++GN + SI+         L  LDL  N+L
Sbjct: 398 VGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNEL 443



 Score = 29.9 bits (64), Expect = 0.015
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +1

Query: 4   NKLQEIQRDVFVELPALKYLDLSFNSI--NLAHDGCFEHLSALNELVLEANAMAVLTRDT 177
           N L+++ + +F  L  L  L+L+ N +  +   +  F  L  L  L L  N +  +    
Sbjct: 295 NGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARM 354

Query: 178 FRGLGNLTRLDLRSNKLSMI 237
           F+ L  L  LDLR+N +  I
Sbjct: 355 FKDLFFLQILDLRNNSIDRI 374



 Score = 29.9 bits (64), Expect = 0.015
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 306  ISERAFDGLALLQKLSMTGNKLKSINEGLLEGVRGLNLLDLRNNQLEYFSEDTVKPI 476
            I  R F+GL  LQ L +  N+++ +     E +  L  L L+NN + +    T  P+
Sbjct: 833  IQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPL 889



 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 133 LVLEANAMAVLTRDTFRGLGNLTRLDLRSNKL 228
           L +  N + ++  +TF    NLTR+D+ +N +
Sbjct: 622 LFINNNYINLVRPNTFTDKVNLTRVDMYANMI 653



 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 339 LQKLSMTGNKLKSINE 386
           LQ L++T N+L+ IN+
Sbjct: 173 LQTLNLTENRLRDIND 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,090
Number of Sequences: 438
Number of extensions: 1500
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)