Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1997X
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1000 - 8439183-8439824                                           29   2.9  
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    28   6.7  

>07_01_1000 - 8439183-8439824
          Length = 213

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 68 CCAKWNDFTLCISCNSIIV 12
          CC+ W DF  C+ C +I++
Sbjct: 11 CCSSWKDFCWCLLCIAILL 29


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 25  LQLIHKVKSFHLAQHIYKLKYKNWKKLQTYNGIIEVGTY 141
           +Q  H+ K FH   H++++  K  KKL   +  +E G Y
Sbjct: 236 IQEAHRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGRY 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,526,605
Number of Sequences: 37544
Number of extensions: 240147
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)