Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1996
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 30 0.43
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.0
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 27 4.0
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 5.3
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 26 7.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 7.0
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 7.0
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 25 9.3
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 25 9.3
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 29.9 bits (64), Expect = 0.43
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 506 HKAYEGSVKKYHSWVTQQLFIFICKMSPTFAQMIKSFG------VDGDIKSFETKLASFN 667
H +G++ +HS +Q + + P FA M K+ +DG ++ E KL S
Sbjct: 948 HFGKQGTIFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG-VEKKEAKLRSMI 1006
Query: 668 ITLHLNRCKIDD 703
T+H ++ KI D
Sbjct: 1007 KTIHRDKKKIQD 1018
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 174 LHIFKTNYCVLCGASHCKYLLAVILNILFTRIL*LQLIYY 55
LH+ + + C S C Y L+++ NI L L YY
Sbjct: 41 LHLMTSQHIFKC-LSSCNYALSILHNICLASFLYLSKCYY 79
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 154 VCFEDVKSFPPVVNGKINLVSFLEAATDLVY 246
V FED K PP+V G + V F DL++
Sbjct: 293 VLFEDGKWSPPIVPGLHSRVEFTIPVNDLIH 323
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 676 QCDIETRQFCLETFDITINSKRFDHLCKSW 587
Q + Q+ L T DIT+N+++ + K W
Sbjct: 856 QIEPTNSQYFLRTLDITLNNEKLKSVAKFW 885
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = +3
Query: 288 DMQGNI-DRIKKNYKFD 335
D+QG I DR+KK Y+FD
Sbjct: 412 DIQGTILDRVKKGYQFD 428
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 450 VDILENLQAKKEINMKYVFTKH 515
+ +++ AKKEI+++Y+ T H
Sbjct: 42 IPVIKEKTAKKEIDLQYILTTH 63
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 443 SICRYTRKFTGKKGDKYEICIHKA 514
S R T+K TG++ DKY + I +A
Sbjct: 166 SYMRQTKKMTGRELDKYNLKIRQA 189
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 579 LQMNINNCCVTQL*YFFTEPSYAL*IHISYLSPFLPVNFLVYLQILIQKTAELC 418
L + +NN + + T+ Y L I +YLS +L F L +++TAE C
Sbjct: 122 LHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYL---FTELLLPTLRRTAEEC 172
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 461 RKFTGKKGDKYEICIHKAYEGS-VKKYHSWVTQQLFIFICKMSPTFA 598
RK +G D + +A+E + SW QL F+ + SP FA
Sbjct: 103 RKLSGSVEDARD-ATQEAWESQKASLFESWSDSQLRAFLARHSPQFA 148
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 708 KKSSILQRFKCNVILKLANFVSKLLISPSTPKDLIICAK 592
K ++L +K ILKL +F S ++ PS P IC++
Sbjct: 152 KPQNLLVDYKTG-ILKLCDFGSAKVLVPSEPNVSYICSR 189
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 82 DFIITINLLHIYKTYLVIVIFTKNMIK 2
DFI+ I + Y TYL +F +N K
Sbjct: 72 DFIMNIYFFYQYSTYLENFVFARNAKK 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,540
Number of Sequences: 5004
Number of extensions: 57687
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -