Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1996
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213...    32   0.45 
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    30   2.4  
12_02_0776 - 23064167-23064239,23065214-23065518,23065614-230657...    29   5.5  
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383...    28   9.6  

>04_03_1027 -
           21820843-21820878,21820974-21821117,21821220-21821358,
           21821522-21821652,21823615-21823670,21823964-21824258
          Length = 266

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
 Frame = +3

Query: 255 RLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLMLEEINNGKA----PVTEGVLWL 416
           ++G   A ++ D+Q NI+R+++ Y  D +    L  ++ +E++ G A         +LWL
Sbjct: 100 KIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARAILWL 159

Query: 417 NRALLF 434
            R++ F
Sbjct: 160 TRSMDF 165


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 542 SWVTQQLFIFICKMSPTFAQMIKSFGVDGDIKSFETKLAS 661
           +W ++ +F++    +  FA ++++  VDGD+ S+  KL S
Sbjct: 340 AWFSRDIFLYRLSKTDFFAVILEATVVDGDLLSWTRKLKS 379


>12_02_0776 -
           23064167-23064239,23065214-23065518,23065614-23065727,
           23065812-23065918,23065997-23066143,23066227-23066326,
           23066421-23066522,23066702-23066776,23066973-23067152,
           23067266-23067355,23067435-23067559,23067847-23067910,
           23067993-23068197,23068818-23068966
          Length = 611

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 750 MLVKLYH*ISCCL*KKSSILQRFKCNVIL-KLAN-FVSKLLISPSTPKDLIICAKVGDIL 577
           +L+  YH ++C       ++  F   V+L +L N F    L S  TP +  ICA + D+L
Sbjct: 305 LLLSKYHPVTCLKIACGLMICSFPVLVVLGQLINRFSCHALDSSRTPSEESICANLLDVL 364

Query: 576 QMNIN 562
           Q  ++
Sbjct: 365 QNGLS 369


>06_03_0670 -
           23336385-23336504,23336769-23337092,23338315-23338387,
           23338715-23338761,23338955-23339104,23339409-23339474,
           23339940-23340013,23340740-23341520,23341730-23342146,
           23344001-23344003
          Length = 684

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 648 VSKLLISPSTPKDLIICAKVGDILQ 574
           V + LI P  P+D  +C  VGDIL+
Sbjct: 61  VQRRLIRPCPPRDDSVCWAVGDILE 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,915,735
Number of Sequences: 37544
Number of extensions: 306199
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)