Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1996
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-15|AAK26154.1|  231|Caenorhabditis elegans Hypothetical...    44   2e-04
AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical...    41   9e-04
AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p...    33   0.23 
AF014939-2|ABA00177.1|  537|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical ...    29   2.8  
U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U39855-3|AAA81082.1|  467|Caenorhabditis elegans Patterned expre...    29   3.7  
Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AC090999-15|AAK26154.1|  231|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14a protein.
          Length = 231

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = +3

Query: 213 ELLGSCNGFGLPC*RLGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEI----NN 380
           + L +C G       LG  F+ V+ D+QGN+D+++  ++ D+     +  L +     + 
Sbjct: 45  QFLSACQGIADFVSFLGATFSLVRKDIQGNVDKVRVRFEKDQEGQKYLQQLIDADLAEHG 104

Query: 381 GKAPV-TEGVLWLNRALLF 434
           GK  + TEG+LWL R L F
Sbjct: 105 GKFGIATEGLLWLKRGLQF 123


>AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14b protein.
          Length = 304

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
 Frame = +3

Query: 258 LGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEI----NNGKAPV-TEGVLWLNR 422
           LG  F+ V+ D+QGN+D+++  ++ D+     +  L +     + GK  + TEG+LWL R
Sbjct: 133 LGATFSLVRKDIQGNVDKVRVRFEKDQEGQKYLQQLIDADLAEHGGKFGIATEGLLWLKR 192

Query: 423 ALLF 434
            L F
Sbjct: 193 GLQF 196


>AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p450
           family protein 33C1 protein.
          Length = 497

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 557 QLFIFICKMSPTFAQMIKSFGVDGDIKSF-ETKLASFNITLHLNRCKID 700
           +L IF+    P FA+++     +G IK+F +T LA FN  +  +R +ID
Sbjct: 209 KLHIFLAMNIPIFAKLLPESLYEGPIKTFRDTTLAFFNKQIEAHRHRID 257


>AF014939-2|ABA00177.1|  537|Caenorhabditis elegans Hypothetical
           protein ZC132.3b protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 344 GIFIKFVIFFYSINISLHIKFYRCKSCAKASTR*TKSVAASKKLTKLIFPFTTG 183
           GIF+  ++ FY + + +H+ F +   C +  +     ++  + +TK IF    G
Sbjct: 34  GIFLGLLVVFYGLILIIHMIFSKKSECEEDQSSLKPLLSIYRTITKRIFTVVHG 87


>AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical
           protein ZC132.3a protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 344 GIFIKFVIFFYSINISLHIKFYRCKSCAKASTR*TKSVAASKKLTKLIFPFTTG 183
           GIF+  ++ FY + + +H+ F +   C +  +     ++  + +TK IF    G
Sbjct: 34  GIFLGLLVVFYGLILIIHMIFSKKSECEEDQSSLKPLLSIYRTITKRIFTVVHG 87


>U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical
           protein F55A4.10 protein.
          Length = 633

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 455 YTRKFTGKKGDKYEICIHKAYEGSVKKYHSWVTQQLFI 568
           Y   FT  K  +  +C+H+A   S+ + +S    QLF+
Sbjct: 589 YKNMFTSSKWHEIALCVHRALTNSLDRSNSRSELQLFV 626


>U39855-3|AAA81082.1|  467|Caenorhabditis elegans Patterned
           expression site protein 8 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 335 IKFVIFFYSINISLHIKFYRCKSCAKASTR*TKSVAASKKLT 210
           + FV    +IN    I+ Y C  CA+ S   T  +A + KLT
Sbjct: 89  VPFVAAHTTINFECEIEMYICSGCAERSCE-TSPLALTSKLT 129


>Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical
           protein C40H1.4 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 571 EYK*LLCDPTVILLYRTFICFVNTYFIFISFF 476
           EYK L C  +V  LY  F+ +V    +FI FF
Sbjct: 243 EYK-LPCQQSVANLYLAFVIYVTFAILFIQFF 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,096,876
Number of Sequences: 27780
Number of extensions: 323907
Number of successful extensions: 771
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)