Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1996
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 200 FPFTTGGKDFTSSKQTIVCCVELAIV 123
           FP T  G++    +QTI  CV  A+V
Sbjct: 201 FPATPTGREVALIEQTIGTCVANAVV 226


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 544 TVILLYRTFICFVNTYFI 491
           T+ILL    +C++NT+ +
Sbjct: 554 TIILLAGVLVCYLNTFLL 571


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 558 CCVTQL*YFFTEPSYAL*IHISYLSPFLPVNFLVY 454
           CC  ++ +  T P+  + +    +  F+PV +L Y
Sbjct: 488 CCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTY 522


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 558 CCVTQL*YFFTEPSYAL*IHISYLSPFLPVNFLVY 454
           CC  ++ +  T P+  + +    +  F+PV +L Y
Sbjct: 541 CCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTY 575


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 544 TVILLYRTFICFVNTYFI 491
           T+ILL    +C++NT+ +
Sbjct: 644 TIILLAGVLVCYLNTFLL 661


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 120 YLLAVILNILFTRIL*LQLIYYTFTK 43
           Y++ VIL +LF  ++ L  I++  T+
Sbjct: 315 YMVTVILGLLFHALITLPTIFWFLTR 340


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 539 DTSLQNLHMLCEYIFH 492
           D +  +LH L E+I+H
Sbjct: 75  DVAFSDLHALVEFIYH 90


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 329 FVIFFYSINISLHIKFYRCKSCAKAST 249
           F+  FYS +  L      C+ C K+ T
Sbjct: 357 FIYAFYSADFRLAFWRLTCRKCFKSRT 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,481
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)