Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1994
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5AKD9 Cluster: Putative uncharacterized protein; n=2; ...    37   0.45 
UniRef50_A5BRY8 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_A3HXB5 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE...    33   5.6  
UniRef50_A6XMX0 Cluster: AreA; n=1; Penicillium marneffei|Rep: A...    33   5.6  

>UniRef50_A5AKD9 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 436

 Score = 36.7 bits (81), Expect = 0.45
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 280 YDYVFTYLHYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIY-GILGLLKSTLLSFH 113
           +DY FT +H +P F  P   T  R +   N Q  D+   L++ G LG+      S H
Sbjct: 80  HDYAFTTIHKYPLFMTPSYRTAFRLLAHGNGQVLDEELNLLWPGFLGMKLEDGFSMH 136


>UniRef50_A5BRY8 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 319

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 274 YVFTYLHYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIY-GILGLLKSTLLSFH 113
           YVFT +H +P F  P   T  R     N Q   +   L++   LG++   LL+FH
Sbjct: 67  YVFTTIHKYPLFMTPSCRTAFRLPAHGNAQVLHEELNLLWPDFLGMVFYMLLAFH 121


>UniRef50_A3HXB5 Cluster: Putative uncharacterized protein; n=1;
           Algoriphagus sp. PR1|Rep: Putative uncharacterized
           protein - Algoriphagus sp. PR1
          Length = 564

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 315 GIRTL*I*IYRNTIMYLPTFIIFQPFFCPRFLRYRERFYAVIVNRAMTPP 166
           G R+  +  +RN++MY+P   +         LRY  RFY+ +     TPP
Sbjct: 395 GFRSTRVRTFRNSVMYIPNGKVADATIDNHGLRYYRRFYSTLTITYDTPP 444


>UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE
           MCM FAMILY; n=1; Encephalitozoon cuniculi|Rep: DNA
           REPLICATION LICENSING FACTOR OF THE MCM FAMILY -
           Encephalitozoon cuniculi
          Length = 708

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -1

Query: 211 RKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVFFS 80
           RK L S+R  GD + IL+ G  G+ KS LLSF ++  E+G++ S
Sbjct: 348 RKELGSSRLRGDIN-ILLAGDPGISKSQLLSFIHRTSERGMYTS 390


>UniRef50_A6XMX0 Cluster: AreA; n=1; Penicillium marneffei|Rep: AreA
           - Penicillium marneffei
          Length = 883

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 432 LTQLLENSYTSSANASLDFMNIASFIVP 515
           L Q  +++ T+SA+AS DFMN+  FIVP
Sbjct: 153 LRQANQSNNTASASASADFMNLDEFIVP 180


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,010,438
Number of Sequences: 1657284
Number of extensions: 9265209
Number of successful extensions: 15831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15827
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)