Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1994
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    29   0.72 
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   2.2  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   6.7  

>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 283 KYDYVFTYLHYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILG 143
           KYD++ TY   F +F+LP    +   + R++ Q   D+ I +  +LG
Sbjct: 188 KYDFIITYKTSFYSFYLPIKCAL--LLSRNSNQKAYDTTIKLSKLLG 232


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 360 TLFRFYLLLPFHISLINVIKY*YALTQLLENSYTSSANASLDFMNIA 500
           T+F  Y   PF I  +N+I      T++  N   +   A +D++N A
Sbjct: 259 TMFSCYCEEPFTIEPVNIISEHNGCTRVTPNLNPTCFKADIDYLNEA 305


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 9  SGEVWVVLDWLIVAVGA 59
          S  VW VL W++ AVGA
Sbjct: 12 STTVWHVLSWILYAVGA 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,308
Number of Sequences: 5004
Number of extensions: 43437
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)