Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1994
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z11505-1|CAA77582.1|  460|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 SYFCK-FKSKEF*FPYELIHL*VGRYDILTLFRFYLLLPFHISLINVIKY*YAL 434
           S FCK      +   + L+H+    Y + TL   Y+++PFHISL  + ++ Y +
Sbjct: 61  SVFCKTLNFAIYRAGFRLLHMCYNVYILYTLG--YMIVPFHISLYFLFEFTYTV 112


>Z11505-1|CAA77582.1|  460|Caenorhabditis elegans Hypothetical
           protein F59B2.2 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 598 ASFLKTFGILQ*TLKVCNVLWTSIKFY 518
           A+FL  FG+L  T+ +C    T++ F+
Sbjct: 264 AAFLAPFGVLSTTMIICTAFMTALGFF 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,479
Number of Sequences: 27780
Number of extensions: 236479
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)