Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1993
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    31   0.17 
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   3.6  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   4.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   6.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   8.4  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   8.4  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 236  TKNWNNIMA*NCTITLLIQSNLKTYFWSQNTKILQRSYLYD*DLVFMSLFKLYYI 400
            T  +N ++    T+ LL +++   YFWS+  K   R   +D + V + +F L +I
Sbjct: 1798 TLMFNELLHFKETVGLLCKNSFNNYFWSREVKAFYRED-HDDEAVVIKMFSLEFI 1851


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 268 VLCHNIVPIFCKERVIKRYPFCVSVSFRSDAVTHNSDVLQTWFVRIF 128
           V+  N+VP   K  ++++   C   SF S    HNS +LQ   V  F
Sbjct: 791 VILPNVVPNLLK--LVEQLHCCYEPSFISGLGMHNSSILQKSIVERF 835


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 115 TRSRALTYCKSFKSITIIF 59
           TR++AL Y  SFKS+T +F
Sbjct: 633 TRAQALLYLSSFKSVTGMF 651


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
 Frame = +2

Query: 110  PSVYPQKNSDKPRLKDITIMGYSIRTKRYRYTEWISFNN-TLFTKNWNNI--MA*NCTIT 280
            PS+YPQ NSD   L+D       ++   +R  E   FN+ ++F    +++  +   CT+ 
Sbjct: 1571 PSLYPQVNSDS-SLED-------VKENSFRPHEISRFNSQSVFKSKKHHLKSIVVKCTLQ 1622

Query: 281  LLIQSNLKTYFWSQN--TKILQRSYLYD*DLVFMSLFKLYYINNTFKL 418
            LL+ + L   F S N  T I +R  +   D++  S       N+ F++
Sbjct: 1623 LLMLNCLWELFHSDNMLTNIPKRKMVKLLDILKQSWEFAESFNSDFEI 1670


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 579 NIYENTVLAIVCIIERIIFFSVRLLDTRYRIFTRENLFMSVFV 451
           ++YE   L    +   I+F ++ L++    I+ +E  F+ +FV
Sbjct: 645 SLYELEELPTGLLQSSILFITLNLIEMAIDIYFKEQAFIEIFV 687


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 274 RTVLCHNIVPIFCKERVIKRYPFCVSVSFRSDAVTHNSDVLQTWFV 137
           + V+ ++ +P+FC  +   +Y  C   SF S   T +  +  T+ V
Sbjct: 218 KKVISNHGIPLFCSIQYQGKYIMCAGGSFLSVYTTPDMQLQNTYCV 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,841
Number of Sequences: 5004
Number of extensions: 61692
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)