Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1993
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0189 + 1397068-1397241,1397713-1397804,1398456-1398546,139...    28   8.7  
10_06_0132 + 11073057-11073345,11073899-11073903,11074358-110744...    28   8.7  
08_02_0184 + 13947739-13947930,13948289-13948465,13948546-139486...    28   8.7  

>12_01_0189 +
           1397068-1397241,1397713-1397804,1398456-1398546,
           1398931-1399052,1399142-1399289,1399596-1399665,
           1400465-1400517,1400678-1400822,1401308-1401426,
           1401480-1401527,1401528-1401599,1401902-1402024,
           1402025-1402131,1402437-1402547,1402585-1402777,
           1402959-1403129,1403548-1403673
          Length = 654

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 279 VIVQFYAIILFQFFVKSVLLND 214
           V++ +YA+ILFQ FV    +N+
Sbjct: 408 VLINYYAMILFQVFVSEYAVNE 429


>10_06_0132 +
           11073057-11073345,11073899-11073903,11074358-11074404,
           11074843-11074967,11078036-11078592
          Length = 340

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 300 RFDWINNVIVQFYAIILFQ 244
           R+DW   +I QFYA + +Q
Sbjct: 320 RYDWSEEIICQFYATVWYQ 338


>08_02_0184 +
           13947739-13947930,13948289-13948465,13948546-13948665,
           13948709-13948753,13948848-13949012,13949324-13949402,
           13949552-13949631,13950548-13950616,13950948-13951031
          Length = 336

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 247 PIFCKERVIKRYPFCVSVSFRSDAVTHNSDVLQTWFVRIFLRI 119
           P+ CKE VI ++    + S  +DA+   + VL    ++ FLRI
Sbjct: 180 PLLCKEFVIDKWQIYYARSQGADAILLIAAVLPDLDIKYFLRI 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,539
Number of Sequences: 37544
Number of extensions: 293492
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)