Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1993
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine rec... 29 4.5
Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z99281-4|CAB16509.1| 571|Caenorhabditis elegans Hypothetical pr... 28 7.9
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 28 7.9
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 28 7.9
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 28 7.9
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 28 7.9
AF036701-2|AAB88369.2| 625|Caenorhabditis elegans Hypothetical ... 28 7.9
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 28 7.9
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 28 7.9
>U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 20 protein.
Length = 330
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 452 TKTLMNKFSLVKIRYLVSSKRTEKNIILSIIQTIAKTVFS*ILYHYVYI*PDD*INTLFL 631
T TL N++SL + + + + N+ SI T T+F ILY + I I+ + L
Sbjct: 222 TSTLSNRYSLQQNMKSMETLKVFANL-QSIFLTAQMTIFLFILYVGLSIEKPTYISLVEL 280
Query: 632 KDNYPI--SVQLKILYK 676
+YPI V + IL+K
Sbjct: 281 NASYPIYAVVSIVILFK 297
>Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical
protein F16H6.3 protein.
Length = 257
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 101 CPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYR 199
C + S Y +N+D PRL TI+ R +R+R
Sbjct: 110 CCKTSAYNCRNADFPRLNCATILPAQCRDQRWR 142
>Z99281-4|CAB16509.1| 571|Caenorhabditis elegans Hypothetical
protein Y57G11C.7 protein.
Length = 571
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +2
Query: 47 VPFIENNSNGLEAFAISQCPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYRYTEWIS 217
V + +S L F + + PRP + +KN+ L D+ ++ ++ + R+++ IS
Sbjct: 25 VSYYPTDSGCLVQFTVQRLPRPEKHIEKNALNAMLDDLAVI---MKNPKLRFSDVIS 78
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 GKSLVPFIENNSNGLEA--FAISQCPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYRYTE 208
GK + I NS G A A QC P+ P KN D+ K + ++ K E
Sbjct: 537 GKYVFRVIARNSVGDSAARLAKDQCETPAKQPDKNPDEVAAKGTSPENIIVQWKPMSREE 596
Query: 209 W 211
W
Sbjct: 597 W 597
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 GKSLVPFIENNSNGLEA--FAISQCPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYRYTE 208
GK + I NS G A A QC P+ P KN D+ K + ++ K E
Sbjct: 537 GKYVFRVIARNSVGDSAARLAKDQCETPAKQPDKNPDEVAAKGTSPENIIVQWKPMSREE 596
Query: 209 W 211
W
Sbjct: 597 W 597
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 GKSLVPFIENNSNGLEA--FAISQCPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYRYTE 208
GK + I NS G A A QC P+ P KN D+ K + ++ K E
Sbjct: 721 GKYVFRVIARNSVGDSAARLAKDQCETPAKQPDKNPDEVAAKGTSPENIIVQWKPMSREE 780
Query: 209 W 211
W
Sbjct: 781 W 781
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 GKSLVPFIENNSNGLEA--FAISQCPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYRYTE 208
GK + I NS G A A QC P+ P KN D+ K + ++ K E
Sbjct: 721 GKYVFRVIARNSVGDSAARLAKDQCETPAKQPDKNPDEVAAKGTSPENIIVQWKPMSREE 780
Query: 209 W 211
W
Sbjct: 781 W 781
>AF036701-2|AAB88369.2| 625|Caenorhabditis elegans Hypothetical
protein ZC416.6 protein.
Length = 625
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 692 CCP--ENICIIFLIEQKLGNYLLKKEYLSSHLVKYIHNGI 579
C P + ++F +EQKLG + + YL +L + H I
Sbjct: 386 CVPYEKGSALLFYLEQKLGGSEIFEAYLKDYLKTFAHQAI 425
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 GKSLVPFIENNSNGLEA--FAISQCPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYRYTE 208
GK + I NS G A A QC P+ P KN D+ K + ++ K E
Sbjct: 537 GKYVFRVIARNSVGDSAARLAKDQCETPAKQPDKNPDEVAAKGTSPENIIVQWKPMSREE 596
Query: 209 W 211
W
Sbjct: 597 W 597
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 GKSLVPFIENNSNGLEA--FAISQCPRPSVYPQKNSDKPRLKDITIMGYSIRTKRYRYTE 208
GK + I NS G A A QC P+ P KN D+ K + ++ K E
Sbjct: 721 GKYVFRVIARNSVGDSAARLAKDQCETPAKQPDKNPDEVAAKGTSPENIIVQWKPMSREE 780
Query: 209 W 211
W
Sbjct: 781 W 781
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,851,463
Number of Sequences: 27780
Number of extensions: 327391
Number of successful extensions: 833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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