Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1991
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    28   1.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    28   1.6  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   2.2  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   6.6  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    26   6.6  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   8.8  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   8.8  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   8.8  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 65  TQPKRNLSPSEQLTLMQYEMFNGSKNQLAPPISNGFHAVDPSKESDYRTINSVTKQIKPD 244
           T+ +R++  +++L    YEM+N +   LAP I   F  VD +K   Y         ++P+
Sbjct: 357 TRQERDVKLAQELMRTCYEMYNMTATGLAPEIV--FFDVDQTKNEIYSKRRDQHNLMRPE 414


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 402 LDELLALLVNTPFPLVARSSLIWSF 328
           LD +L   VN+P PL+ R+S +W F
Sbjct: 846 LDFILTDCVNSPKPLLRRASSLWLF 870


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 101 LTLMQYEMFNGSKNQLAPPISNGFHAVDPSKESDYRTINSVTKQIKP 241
           +T + +  F GS N+  P  ++ FH  D    S YR+   V   + P
Sbjct: 23  VTFILWNGFPGSSNRPLPSSNDEFHYEDIELPSGYRSEGEVVDLLNP 69


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 20  DTVQHNNAQYNGVTVTQPKRNLSPSEQLTLMQYEMFNGSKNQ 145
           +TV   NA   G+T    K+ +   +QL+L  +E    ++NQ
Sbjct: 617 ETVAKVNAGDEGITSEDMKKKIDEIQQLSLKVFESVYKNQNQ 658


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 363 EMVCLREVLKVHLVVRTLIFQYHGR 437
           E++C R + ++   +RTL F Y  R
Sbjct: 225 ELICERSITRMDYPIRTLSFSYDSR 249


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 571 DSNLPIVSRLTRSPHPMKLPLGAITLYIPSSSLACSIG-MNRY 446
           D  +P++SR   +    +LP+  I L +   S+A S G +N Y
Sbjct: 374 DMGVPVISRKLCADLASELPVSVIVLLLEHISIAKSFGRVNDY 416


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = +1

Query: 403 WFGL*FFNTTAEINSTCSY---LWNTQE--TNWE 489
           W+G+ F N    INS  +Y   +W T+   TNW+
Sbjct: 432 WYGIDFSNLQDYINSLANYGLPIWLTEFACTNWD 465


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 29  QHNNAQYNGVTVTQPKRNLSPSEQLTLMQ 115
           QH+N+    V+ +QP  NLS S  L  +Q
Sbjct: 417 QHHNSYRGSVSNSQPSGNLSESTNLQPVQ 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,737
Number of Sequences: 5004
Number of extensions: 64813
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)