Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1991
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80931-7|AAB38003.2|  526|Caenorhabditis elegans Organic anion t...    29   3.5  
AF152095-1|AAF73198.1|  526|Caenorhabditis elegans multispecific...    29   3.5  
Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U80931-7|AAB38003.2|  526|Caenorhabditis elegans Organic anion
           transporter protein 1 protein.
          Length = 526

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 249 YLSGLIC--FVTLFIVR*SLSLDGSTAWNPLLIGGASW 142
           ++ G+IC  F+   ++     L GS  WN  +IG A W
Sbjct: 334 FIVGIICTNFIVYALLYNMEKLSGSLYWNSAIIGAARW 371


>AF152095-1|AAF73198.1|  526|Caenorhabditis elegans multispecific
           organic anion transporterprotein.
          Length = 526

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 249 YLSGLIC--FVTLFIVR*SLSLDGSTAWNPLLIGGASW 142
           ++ G+IC  F+   ++     L GS  WN  +IG A W
Sbjct: 334 FIVGIICTNFIVYALLYNMEKLSGSLYWNSAIIGAARW 371


>Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical
           protein F25B3.3 protein.
          Length = 654

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 144 NSHRRSATGSTLLIRLKKVIIGL*IVLQNKSN--PINMVLYNTVRVKSDDRYERYNDITN 317
           N  +     S  L++L K++    +  Q   N   +NM L NT++V  D RY   +DI  
Sbjct: 321 NFEKTKCISSDKLVKLSKLLSNFLVFNQKGHNLPEMNMDLINTLKVSLDIRYND-DDIYE 379

Query: 318 SHLRK 332
             LR+
Sbjct: 380 LSLRR 384


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = +2

Query: 32  HNNAQYNGVTVTQPKRNLSPSEQLTLMQYEMFNGSKNQLAPPISNGFHAVDPSKESDYRT 211
           H N  Y G T   PK   SPS     +  E F    N  +P  S+      P  +  Y T
Sbjct: 310 HRNP-YVGSTQPSPKEQCSPSPNGFSIPTERFESPINGFSPSYSSVLKNRIPIAKQGYAT 368

Query: 212 INSVT 226
            +S++
Sbjct: 369 TDSIS 373


>AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical
           protein K02E7.11 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +3

Query: 624 VTSLFCVICNLTS--SIFYQI 680
           VTS+ C++CN  +  S+FY+I
Sbjct: 110 VTSILCIVCNFVNFCSVFYEI 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,437
Number of Sequences: 27780
Number of extensions: 369388
Number of successful extensions: 1009
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)