Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1990
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7MWZ2 Cluster: Capsular polysaccharide transport prote...    35   2.0  
UniRef50_A1RDI3 Cluster: Putative transcriptional regulator, lac...    33   6.0  

>UniRef50_Q7MWZ2 Cluster: Capsular polysaccharide transport protein,
           putative; n=1; Porphyromonas gingivalis|Rep: Capsular
           polysaccharide transport protein, putative -
           Porphyromonas gingivalis (Bacteroides gingivalis)
          Length = 822

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +2

Query: 263 LCTSKCAASTVYVLRKHRPDQDLYLRTFDSMFVQDKIELDCIVLGYVPVRGSLGTFFSNR 442
           + T++ A  T+Y++R+   D+  YL   + ++ ++K    C+VL  V   GS GT+    
Sbjct: 729 MITNRVADLTIYIIRQGVLDRR-YLGEIERLYTENKFTNMCLVLNDVSYSGSRGTYGYGY 787

Query: 443 GF 448
           G+
Sbjct: 788 GY 789


>UniRef50_A1RDI3 Cluster: Putative transcriptional regulator, lacI
           family; n=1; Arthrobacter aurescens TC1|Rep: Putative
           transcriptional regulator, lacI family - Arthrobacter
           aurescens (strain TC1)
          Length = 339

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 362 QDKIELDCIVLGYVPVRGSLGTFFSNRGF 448
           QD++  D ++LG+ P  G L TF ++RG+
Sbjct: 154 QDELPFDTVILGHRPGGGQLATFLADRGY 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,574,302
Number of Sequences: 1657284
Number of extensions: 9292441
Number of successful extensions: 17039
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17037
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)