Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1990
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0495 - 29779499-29781325                                         31   0.80 
11_06_0445 - 23679918-23680282,23680415-23683349                       30   1.9  
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253...    29   2.4  
04_04_0231 - 23790745-23791131,23791207-23792382                       27   9.9  

>01_06_0495 - 29779499-29781325
          Length = 608

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 320 DQDLYLRTFDSMFVQDKIELDCIVLGY 400
           D D  ++ FD M V+D I ++C++ GY
Sbjct: 135 DMDCAVKVFDEMPVKDPIPMNCLITGY 161


>11_06_0445 - 23679918-23680282,23680415-23683349
          Length = 1099

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 426 VPNEPRTGT*PSTMQSNSILSWTNIESN 343
           +PN   TGT P  + S+  L W N+++N
Sbjct: 199 IPNNELTGTIPPLLGSSKTLVWVNLQNN 226


>11_06_0442 -
           23622633-23623000,23623149-23623721,23624795-23625335,
           23625807-23625982,23626081-23626804
          Length = 793

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 426 VPNEPRTGT*PSTMQSNSILSWTNIESN 343
           +P+   TGT P  + SN  L W N+++N
Sbjct: 71  IPHNQLTGTIPQLLGSNKPLIWVNLQNN 98


>04_04_0231 - 23790745-23791131,23791207-23792382
          Length = 520

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 212 NSMFVSQVDVLPRILFGLCTSKCA--ASTVYVLRKHR 316
           N  FV  V +  +ILFGLC S C+  A T++   K R
Sbjct: 220 NRKFVPDVYMYNQILFGLCKSGCSNKALTLFCNLKKR 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,228
Number of Sequences: 37544
Number of extensions: 237738
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)