Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1990
         (654 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    27   0.68 
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   6.4  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   8.4  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    23   8.4  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    23   8.4  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -1

Query: 429  KVPNEPRTGT*PSTMQSNSILS---WTNIESNVRKYKS*SGRCFLST*TVLAAHLLVHNP 259
            +V +E   G  P T++++ + S   W+N+    ++  S   RC+     +LAA  ++  P
Sbjct: 978  EVRSELLDGVLPETLEAHMLQSPTNWSNVCEAAKRITSKLQRCWDDECAILAAQAMLEEP 1037

Query: 258  -NRI 250
             NR+
Sbjct: 1038 ANRL 1041


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 419  MNPVQGHSPVRCNPIQSYLGQT*NQMS-VSTSPDRD 315
            ++ + GHS      +QS  GQT  ++S V   PD +
Sbjct: 1315 LSSMGGHSQTSAQSLQSIAGQTERKISFVLQEPDNE 1350


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 444 PLFEKKVPNEPRTGT*PSTMQSNSILSWTNIESNV 340
           PL  +KV +  R  T    M     L W N +SN+
Sbjct: 30  PLDFRKVESLRRNSTDTGIMDQQYCLRWNNHQSNL 64


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 444 PLFEKKVPNEPRTGT*PSTMQSNSILSWTNIESNV 340
           PL  +KV +  R  T    M     L W N +SN+
Sbjct: 30  PLDFRKVESLRRNSTDTGIMDQQYCLRWNNHQSNL 64


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 444 PLFEKKVPNEPRTGT*PSTMQSNSILSWTNIESNV 340
           PL  +KV +  R  T    M     L W N +SN+
Sbjct: 30  PLDFRKVESLRRNSTDTGIMDQQYCLRWNNHQSNL 64


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,814
Number of Sequences: 2352
Number of extensions: 10764
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)