Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1990
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical ...    31   0.54 
Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical
           protein F59E12.8 protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 218 MFVSQVDVLPRILFGLCTSKCAASTVYVLRKHRPDQDLYLRTFDSMFVQDKIELDCIVLG 397
           +F    D +P     + TSKC A    +L KH P+    ++  D  FV  + ++  +  G
Sbjct: 180 LFTPSADRIPECPHEITTSKCNAIFSEILSKHPPEYGDLMQLNDREFVSSR-KIPLVGFG 238

Query: 398 YVPVR 412
           + P +
Sbjct: 239 WYPAQ 243


>Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical
           protein T16H12.8 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 499 IVIKTSLIIIYSLLCERIFIRSIFCSSTHV 588
           I++ T+LI++Y+ LC     R +  SS HV
Sbjct: 237 IIVATTLILVYACLCTLWSSREMNTSSLHV 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,834
Number of Sequences: 27780
Number of extensions: 241653
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)