Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1989
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    34   0.027
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    30   0.44 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   1.3  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   9.4  

>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  +DI P+  +S +K  V  K  IP  QQ+         DD   + Y +++ G+ L+
Sbjct: 10  GKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESY-HLEGGSVLH 68

Query: 439 LVV 447
           LV+
Sbjct: 69  LVL 71


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 573 SWDEVDRLCYDCLLDERGIRRPAYIENDIEIDDMFN 680
           S++E++R      L    IR P   END+++D++FN
Sbjct: 253 SFEEIERARQRFALLGDNIREPQEEENDVDVDEIFN 288


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 626 TSFVQQAVIAKSVNFIPGHFIKLLLNNPQ 540
           T+ +      + V F PGHFI+ +L++PQ
Sbjct: 304 TNILNHMTRLRIVPFAPGHFIEYILSHPQ 332


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 501 HVSKDAANTANKLLRIVQEKFDKMSWDEVDRL 596
           +V K     ANK ++  QEK DK+S + VD L
Sbjct: 89  NVVKHFIELANKRVQEAQEKADKISVEYVDDL 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,620
Number of Sequences: 5004
Number of extensions: 57491
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)