Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1989
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028     37   0.016
06_03_0944 + 26202053-26202229,26203788-26204047,26204145-262042...    37   0.016
03_02_0188 + 6251256-6251561                                           30   2.4  
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484     29   3.2  
01_06_0031 + 25760878-25761342                                         29   4.3  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   7.4  

>09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028
          Length = 153

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 24/63 (38%), Positives = 32/63 (50%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  IDI P+  I  +K  V  K  IP  QQ+         DD T + Y NI+ G+ L+
Sbjct: 86  GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NIEGGSVLH 144

Query: 439 LVV 447
           LV+
Sbjct: 145 LVL 147


>06_03_0944 +
           26202053-26202229,26203788-26204047,26204145-26204245,
           26204512-26204584,26205482-26205581
          Length = 236

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 24/63 (38%), Positives = 32/63 (50%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  IDI P+  I  +K  V  K  IP  QQ+         DD T + Y NI+ G+ L+
Sbjct: 114 GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NIEGGSVLH 172

Query: 439 LVV 447
           LV+
Sbjct: 173 LVL 175


>03_02_0188 + 6251256-6251561
          Length = 101

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 510 KDAANTANKLLRIVQEKFDKMSWDEVDRLCYDCLLDE 620
           KD AN  +  +R++  KF+  S  +  R+ YD L DE
Sbjct: 45  KDNANETHFNIRVISPKFEGQSLVKRHRMVYDLLTDE 81


>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
          Length = 519

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 492 KTRHVSKDAANTANKLLRIVQEKFDKMSWDEVDRLCYDCLLDE 620
           KTRH +KD A   N LL ++ E       +   +L  D ++DE
Sbjct: 278 KTRHANKDVAGYGNDLLGLMLEACAPEHGESCPQLSMDEIIDE 320


>01_06_0031 + 25760878-25761342
          Length = 154

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  IDI  +  +  +K  V  +  IP  QQ+         DD T   Y  I+ G+ L+
Sbjct: 86  GKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDY-KIEAGSVLH 144

Query: 439 LVV 447
           LV+
Sbjct: 145 LVL 147


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -1

Query: 657 CHSQCRLVALYLFRPAGSHSKVCQLHPRTFYQTSLEQSSEVCLQYLQHPC*H 502
           C   C ++ + L +P G  S +  L   + +    E+ +  C +  + PC H
Sbjct: 540 CTKACHVLQIPLSQPEGDQSAILSLASASAFAEPCEECNLPCQRVREPPCSH 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,441,027
Number of Sequences: 37544
Number of extensions: 318166
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)