Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1989
         (795 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L44140-7|AAA92650.1|  157|Homo sapiens protein ( , complete cds'...    48   4e-05
J03589-1|AAA36790.1|  157|Homo sapiens protein ( Human ubiquitin...    48   4e-05
BX664739-2|CAI43235.1|  157|Homo sapiens ubiquitin-like 4 protein.     48   4e-05
BX664739-1|CAI43234.1|  180|Homo sapiens ubiquitin-like 4 protein.     48   4e-05
BC053589-1|AAH53589.1|  157|Homo sapiens ubiquitin-like 4A protein.    48   4e-05
BC043346-1|AAH43346.1|  157|Homo sapiens ubiquitin-like 4A protein.    48   4e-05
D23662-1|BAA04889.1|   81|Homo sapiens ubiquitin-like protein pr...    32   2.7  
BC104664-1|AAI04665.1|   81|Homo sapiens neural precursor cell e...    32   2.7  
BC104201-1|AAI04202.1|   81|Homo sapiens neural precursor cell e...    32   2.7  
BC104200-1|AAI04201.1|   81|Homo sapiens neural precursor cell e...    32   2.7  
CR407662-1|CAG28590.1|   81|Homo sapiens NEDD8 protein.                31   3.6  
BC058929-1|AAH58929.1|  174|Homo sapiens ubiquitin-like 4B protein.    31   3.6  
AK098556-1|BAC05331.1|  174|Homo sapiens protein ( Homo sapiens ...    31   3.6  

>L44140-7|AAA92650.1|  157|Homo sapiens protein ( , complete cds's.
           ).).
          Length = 157

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +1

Query: 250 AVQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGT 429
           A+QG EC + +    L+S LK+ V+ KL++PV QQ+         D   +  Y +I   +
Sbjct: 7   ALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNS 65

Query: 430 KLNLVVKKPESL 465
           KLNLVVK  E +
Sbjct: 66  KLNLVVKPLEKV 77


>J03589-1|AAA36790.1|  157|Homo sapiens protein ( Human
           ubiquitin-like protein (GdX) gene, complete cds. ).
          Length = 157

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +1

Query: 250 AVQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGT 429
           A+QG EC + +    L+S LK+ V+ KL++PV QQ+         D   +  Y +I   +
Sbjct: 7   ALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNS 65

Query: 430 KLNLVVKKPESL 465
           KLNLVVK  E +
Sbjct: 66  KLNLVVKPLEKV 77


>BX664739-2|CAI43235.1|  157|Homo sapiens ubiquitin-like 4 protein.
          Length = 157

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +1

Query: 250 AVQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGT 429
           A+QG EC + +    L+S LK+ V+ KL++PV QQ+         D   +  Y +I   +
Sbjct: 7   ALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNS 65

Query: 430 KLNLVVKKPESL 465
           KLNLVVK  E +
Sbjct: 66  KLNLVVKPLEKV 77


>BX664739-1|CAI43234.1|  180|Homo sapiens ubiquitin-like 4 protein.
          Length = 180

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +1

Query: 250 AVQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGT 429
           A+QG EC + +    L+S LK+ V+ KL++PV QQ+         D   +  Y +I   +
Sbjct: 7   ALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNS 65

Query: 430 KLNLVVKKPESL 465
           KLNLVVK  E +
Sbjct: 66  KLNLVVKPLEKV 77


>BC053589-1|AAH53589.1|  157|Homo sapiens ubiquitin-like 4A protein.
          Length = 157

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +1

Query: 250 AVQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGT 429
           A+QG EC + +    L+S LK+ V+ KL++PV QQ+         D   +  Y +I   +
Sbjct: 7   ALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNS 65

Query: 430 KLNLVVKKPESL 465
           KLNLVVK  E +
Sbjct: 66  KLNLVVKPLEKV 77


>BC043346-1|AAH43346.1|  157|Homo sapiens ubiquitin-like 4A protein.
          Length = 157

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +1

Query: 250 AVQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGT 429
           A+QG EC + +    L+S LK+ V+ KL++PV QQ+         D   +  Y +I   +
Sbjct: 7   ALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNS 65

Query: 430 KLNLVVKKPESL 465
           KLNLVVK  E +
Sbjct: 66  KLNLVVKPLEKV 77


>D23662-1|BAA04889.1|   81|Homo sapiens ubiquitin-like protein
           protein.
          Length = 81

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  IDI P+  +  +K  V  K  IP +QQ+         D+ T   Y  I  G+ L+
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLH 68

Query: 439 LVV 447
           LV+
Sbjct: 69  LVL 71


>BC104664-1|AAI04665.1|   81|Homo sapiens neural precursor cell
           expressed, developmentally down-regulated 8 protein.
          Length = 81

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  IDI P+  +  +K  V  K  IP +QQ+         D+ T   Y  I  G+ L+
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLH 68

Query: 439 LVV 447
           LV+
Sbjct: 69  LVL 71


>BC104201-1|AAI04202.1|   81|Homo sapiens neural precursor cell
           expressed, developmentally down-regulated 8 protein.
          Length = 81

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  IDI P+  +  +K  V  K  IP +QQ+         D+ T   Y  I  G+ L+
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLH 68

Query: 439 LVV 447
           LV+
Sbjct: 69  LVL 71


>BC104200-1|AAI04201.1|   81|Homo sapiens neural precursor cell
           expressed, developmentally down-regulated 8 protein.
          Length = 81

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  IDI P+  +  +K  V  K  IP +QQ+         D+ T   Y  I  G+ L+
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLH 68

Query: 439 LVV 447
           LV+
Sbjct: 69  LVL 71


>CR407662-1|CAG28590.1|   81|Homo sapiens NEDD8 protein.
          Length = 81

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  +DI P+  +  +K  V  K  IP +QQ+         D+ T   Y  I  G+ L+
Sbjct: 10  GKEIEVDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLH 68

Query: 439 LVV 447
           LV+
Sbjct: 69  LVL 71


>BC058929-1|AAH58929.1|  174|Homo sapiens ubiquitin-like 4B protein.
          Length = 174

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G  C + +     ++ LKR V+R+L +P EQQ          DD  +  Y  I     +N
Sbjct: 10  GQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDY-CIGPNASIN 68

Query: 439 LVVKKPESL 465
           ++++  E +
Sbjct: 69  VIMQPLEKM 77


>AK098556-1|BAC05331.1|  174|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25690 fis, clone TST04424. ).
          Length = 174

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G  C + +     ++ LKR V+R+L +P EQQ          DD  +  Y  I     +N
Sbjct: 10  GQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDY-CIGPNASIN 68

Query: 439 LVVKKPESL 465
           ++++  E +
Sbjct: 69  VIMQPLEKM 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,319,518
Number of Sequences: 237096
Number of extensions: 1862710
Number of successful extensions: 3496
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3496
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)