Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1989
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor prot...    28   6.7  
U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precurso...    28   6.7  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    28   8.9  

>Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical
           protein F45H11.2 protein.
          Length = 77

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 259 GGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLN 438
           G E  +DI P+  +  +K  V  K  IP  QQ+         DD T   Y  +  G+ L+
Sbjct: 10  GKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADY-KVLGGSVLH 68

Query: 439 LVV 447
           LV+
Sbjct: 69  LVL 71


>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 486 LQKTRHVSKDAANTANKLLRIVQEKFDKMSWDEVD 590
           LQ+      + A+  N+ +RIVQ+KF++M+ D+ D
Sbjct: 49  LQERVREHNEVASVKNQAMRIVQQKFEEMNRDKKD 83


>U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor protein
           10 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 240 IFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 73
           +FI  I+L  L YC   +   F   D    G GTP+S+   +I+E ++    + LV
Sbjct: 5   VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59


>U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precursor
           protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 240 IFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 73
           +FI  I+L  L YC   +   F   D    G GTP+S+   +I+E ++    + LV
Sbjct: 5   VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
            protein C56C10.12 protein.
          Length = 1599

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = -2

Query: 635  SPYTSFVQQAVIAKSVNFIPGHFIKLL-------LNNPQKFVCSICSI 513
            SP+ S+V   V  KS N   GHF + L       L+N  K   S CSI
Sbjct: 1118 SPFASYVMLRVEQKSFNTFYGHFFETLTKKDKYTLDNAVKKASSKCSI 1165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,183,387
Number of Sequences: 27780
Number of extensions: 320738
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)