Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1989
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.5  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 734 FIFLNFKKSFHYNH 775
           F  L  +K FHYNH
Sbjct: 18  FQTLELEKEFHYNH 31


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 473 HPLSITKDKACQQGCC 520
           HP ++   +AC+QG C
Sbjct: 112 HPHNLVGKEACKQGVC 127


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 473 HPLSITKDKACQQGCC 520
           HP ++   +AC+QG C
Sbjct: 112 HPHNLVGKEACKQGVC 127


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 354 LLFDRYMQLSCNMPFQL*YEHTWIYIY*TFTSLHCLTVIFILEI 223
           + FDRY  +SC +  +L  +   + I  T+  +   TV+ +L++
Sbjct: 150 IAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLPLLKV 193


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 354 LLFDRYMQLSCNMPFQL*YEHTWIYIY*TFTSLHCLTVIFILEI 223
           + FDRY  +SC +  +L  +   + I  T+  +   TV+ +L++
Sbjct: 150 IAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLPLLKV 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,055
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)