Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1988
         (791 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.7  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 750 TNPWISSASSTVPPI 706
           T+ W+SS S  VPP+
Sbjct: 103 TDDWLSSPSGNVPPL 117


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 293 ETNECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 415
           + NEC S+ C N G  + C +        ++  +C C +GF
Sbjct: 298 DINECLSNPCSNAG-TLDCVQL-------VNDYHCNCKLGF 330



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 210 CADGISNSFCGIYVAQSD 157
           C+DG S S+C   + + D
Sbjct: 172 CSDGYSGSYCQTEINECD 189



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 293 ETNECYSSSCKNVG 334
           E NEC S+ C+N G
Sbjct: 184 EINECDSAPCQNGG 197


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 286 VAPSLVIVTSPWLLESSYPFHEALSL 209
           VA   V V SP++L+S    HEA  +
Sbjct: 708 VASPSVSVASPYMLQSPLTPHEAFDV 733


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 286 VAPSLVIVTSPWLLESSYPFHEALSL 209
           VA   V V SP++L+S    HEA  +
Sbjct: 600 VASPSVSVASPYMLQSPLTPHEAFDV 625


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 604 FGTHCSASNSSSNGTY 651
           FG H  AS     GTY
Sbjct: 346 FGVHAPASGGGKEGTY 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,158
Number of Sequences: 336
Number of extensions: 3678
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)