Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1988
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 123 3e-29
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 113 2e-26
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 98 1e-21
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 97 3e-21
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 94 2e-20
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 89 5e-19
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 78 2e-15
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 76 7e-15
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 38 0.002
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.76
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 29 1.0
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.8
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 2.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.4
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 5.4
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 9.4
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.4
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 123 bits (297), Expect = 3e-29
Identities = 56/78 (71%), Positives = 71/78 (91%)
Frame = +3
Query: 246 SSQGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEK 425
+ +GEV +TNDGATILK +SV+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L AEK
Sbjct: 50 TGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEK 109
Query: 426 LLQKGIHPTVISDGFQKA 479
LL+KGIHPTVI++ FQ+A
Sbjct: 110 LLKKGIHPTVIAESFQRA 127
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/78 (47%), Positives = 61/78 (78%)
Frame = +2
Query: 521 VDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVI 700
++L++ ++LL+AA TSLNSK+VSQ+S +LAPIAV A+ V++P V VDL+D++++
Sbjct: 142 IELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDP---RVATNVDLKDIRIV 198
Query: 701 ERIGGTVEDAELIQGLVI 754
+++GG ++D ELI GL +
Sbjct: 199 KKLGGIIDDTELIPGLAL 216
Score = 66.9 bits (156), Expect = 3e-12
Identities = 29/42 (69%), Positives = 37/42 (88%)
Frame = +1
Query: 130 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAAK 255
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ K
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGK 52
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 113 bits (273), Expect = 2e-26
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = +3
Query: 246 SSQGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEK 425
S GE+T+TNDGATIL QM V H AK+LV+LS++QD E GDGTT VVV+AGALL+ AE
Sbjct: 65 SPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEA 124
Query: 426 LLQKGIHPTVISDGFQKALQLALQ 497
L+ KGIHP I+DG++KA Q+A++
Sbjct: 125 LIDKGIHPIRIADGYEKACQVAVK 148
Score = 46.8 bits (106), Expect = 4e-06
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 509 MSTPVDLNNEDA--LLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDL 682
+S VD + E+ L ++A TSL SKVVS+ A IAV A+ +V + V D
Sbjct: 153 ISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDV----DF 208
Query: 683 RDVKVIERIGGTVEDAELIQGLVI 754
+KV ++GG+V+D +L++G+V+
Sbjct: 209 ELIKVDGKVGGSVDDTKLVKGVVV 232
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 166 SNINAAKAVADAIRTSLGPRGMDKMI 243
S+I A K VA+ +RTSLGPRG+DK++
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKIL 63
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 98.3 bits (234), Expect = 1e-21
Identities = 45/86 (52%), Positives = 64/86 (74%)
Frame = +3
Query: 252 QGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLL 431
+GEV I+NDGATI+K + ++HPAAK LV+++RAQD E GDGTTSVVV AG LL A +
Sbjct: 57 RGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFV 116
Query: 432 QKGIHPTVISDGFQKALQLALQVVEK 509
+ G+ +I G++KA QLA+ +++
Sbjct: 117 EDGVSSHLIIRGYRKAAQLAVNKIKE 142
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +1
Query: 136 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 243
D S+ LSNINA AV D IRT+LGP G DK++
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLM 53
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 96.7 bits (230), Expect = 3e-21
Identities = 43/88 (48%), Positives = 64/88 (72%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
G V +TNDG IL+++ V HPAAK ++EL+R QD E GDGTTSV+++AG +L +A LL
Sbjct: 53 GSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLD 112
Query: 435 KGIHPTVISDGFQKALQLALQVVEKCQL 518
+ IHP V+ F++AL+ AL ++++ L
Sbjct: 113 RKIHPVVMIRSFKQALEDALSIIDEITL 140
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1
Query: 160 RLSNINAAKAVADAIRTSLGPRGMDKMI 243
++SNI AAKAVAD IRT LGPR M KM+
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKML 48
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/84 (20%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +2
Query: 506 KMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLR 685
+++ PV++++ + + T + +K+V++ S ++ +A++A+R V S +D++
Sbjct: 137 EITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTVAS--TSNGRMEIDIK 194
Query: 686 DVKVIERI-GGTVEDAELIQGLVI 754
+E++ GG +E + ++ G+++
Sbjct: 195 RYARVEKVPGGEIESSCVLDGVML 218
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 94.3 bits (224), Expect = 2e-20
Identities = 45/81 (55%), Positives = 61/81 (75%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
G+VT+TNDGATIL + V HPA K+LVEL++ QD E GDGTTSVV+IA LL A +L++
Sbjct: 55 GDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVK 114
Query: 435 KGIHPTVISDGFQKALQLALQ 497
IHPT I G++ A++ A++
Sbjct: 115 NKIHPTTIITGYRLAIREAVK 135
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 136 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 243
+K D+R N+ A A+A+ +++SLGP G+DKM+
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKML 50
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 89.4 bits (212), Expect = 5e-19
Identities = 43/87 (49%), Positives = 61/87 (70%)
Frame = +3
Query: 243 SSSQGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 422
S+S G++ +TNDGATILK +++ + AAK+LV +S+ QD E GDGTTSV V A LL AE
Sbjct: 51 SNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAE 110
Query: 423 KLLQKGIHPTVISDGFQKALQLALQVV 503
++ IHP VI DG++ A + A+ +
Sbjct: 111 IMVNAKIHPQVIIDGYRIATKTAIDAL 137
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/30 (50%), Positives = 24/30 (80%)
Frame = +1
Query: 160 RLSNINAAKAVADAIRTSLGPRGMDKMIQA 249
RLS+ A AV D ++++LGP+GMDK++Q+
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQS 51
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 77.8 bits (183), Expect = 2e-15
Identities = 34/81 (41%), Positives = 56/81 (69%)
Frame = +3
Query: 267 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 446
+TND ATI++++ VIHPAAK++V+ ++ Q+ E GD VVV G LL AE +++ G+
Sbjct: 64 LTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLT 123
Query: 447 PTVISDGFQKALQLALQVVEK 509
P I+ G++ AL ++V+E+
Sbjct: 124 PLEIAKGYEMALSHTMEVLEE 144
Score = 33.1 bits (72), Expect = 0.047
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 79 IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 243
+ PKA G + Y+ D + N NA + +++ RTSLGP G +K++
Sbjct: 3 LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIV 55
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 75.8 bits (178), Expect = 7e-15
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
G + +T DG +L +M + +P A + + + AQD GDGTTSV ++ G LL AE ++
Sbjct: 50 GAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIR 109
Query: 435 KGIHPTVISDGFQKALQLALQVVE 506
+G+HP++ISDGF A AL ++
Sbjct: 110 EGLHPSLISDGFNLAKNEALTFLD 133
Score = 42.7 bits (96), Expect = 6e-05
Identities = 29/96 (30%), Positives = 48/96 (50%)
Frame = +2
Query: 473 KSPSIGFTGGRKMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPI 652
K+ ++ F K VD + LL A TSL++K+ S+ LAP V AI + P
Sbjct: 125 KNEALTFLDSFKTDFEVD---REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRP- 180
Query: 653 VSGVGARVDLRDVKVIERIGGTVEDAELIQGLVIPH 760
+DL V++++ + D +LI+GL++ H
Sbjct: 181 ----DEPIDLHMVEIMKMQNRSASDTQLIRGLLLDH 212
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 169 NINAAKAVADAIRTSLGPRGMDKMI 243
NI+AA + D ++++LGP G KM+
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKML 45
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 422
G IT DG T+ + +S+ A+++ +++ + AGDGTT+ V+ A+
Sbjct: 76 GSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETV 135
Query: 423 KLLQKGIHPTVISDGFQKALQLALQVVE 506
+ + G +P + G Q A+ ++ ++
Sbjct: 136 RNVAAGCNPMDLRRGIQLAVDNVVEFLQ 163
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 559 CNITKFQSSFTTLNYFGTHCSASNSS 636
CNI KF SSF T N F T SS
Sbjct: 276 CNIPKFNSSFKTSNDFFTFTKTEESS 301
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 533 NEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIG 712
+ED L ATS +K S + A++ + ++P +S A +R+ +I
Sbjct: 50 SEDILRTGGATSETTKDASAAGPVTPSFAMKRSQTSVQPSMSSQIAIGGMRNPMATRKIA 109
Query: 713 GTVEDA 730
GT DA
Sbjct: 110 GTYRDA 115
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -3
Query: 735 SSASSTVPPIRSMTFTSLRSTLAPTPLTIGSITARIACTA 616
S++SST P S T +S S+ + TP++ SIT+ I+ +A
Sbjct: 141 STSSSTATPSSSSTTSSSSSSSSSTPIS-SSITSSISSSA 179
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 302 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 415
EC S K+ ++I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 512 STPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPI 652
ST D L+ + N ++ H +ILAP +RA++ P+
Sbjct: 2537 STSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPV 2583
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 661 TTNNRFHYCSNC--LHCNGCQNS*VL*NYFGI 572
T NR H+C NC + CN C + + + GI
Sbjct: 184 TFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGI 215
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 250 LLESSYPFHEALSLCGWHQQQLLR 179
LLES+ FH G+HQ+QL R
Sbjct: 254 LLESTDEFHYEQGNLGFHQRQLAR 277
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 422 LSRIQQRTSNNNY*CCSITSFNI 354
LS Q TS NN+ C SI +F I
Sbjct: 177 LSNRQLNTSENNWTCLSIENFGI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,762
Number of Sequences: 5004
Number of extensions: 58168
Number of successful extensions: 209
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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