Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1988
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 107   8e-24
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   92   5e-19
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   6e-16
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              73   3e-13
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   6e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   3e-11
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      56   2e-08
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              50   2e-06
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            41   0.001
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                37   0.016
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  30   2.5  
SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)                       29   4.3  
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       29   5.7  
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 28   10.0 

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  107 bits (258), Expect = 8e-24
 Identities = 52/84 (61%), Positives = 66/84 (78%)
 Frame = +3

Query: 246 SSQGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEK 425
           S  GEVT+TNDGATIL  M V H  AK++VELS++QD E GDGTT VVV+AGALL+ AE+
Sbjct: 61  SPDGEVTVTNDGATILGMMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQ 120

Query: 426 LLQKGIHPTVISDGFQKALQLALQ 497
           LL  GIHP  I+DG++ A ++AL+
Sbjct: 121 LLDWGIHPIRIADGYELAAKIALE 144



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/79 (36%), Positives = 49/79 (62%)
 Frame = +2

Query: 518 PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKV 697
           PVD +N+++L++ A T+L SK+VS+    LA IAV A+ +V +         VD   +KV
Sbjct: 154 PVDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADL----ERKDVDFELIKV 209

Query: 698 IERIGGTVEDAELIQGLVI 754
             + GG ++D  L++G+V+
Sbjct: 210 EGKEGGKLDDTVLVKGVVV 228



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +1

Query: 166 SNINAAKAVADAIRTSLGPRGMDKMI 243
           S+I AA+AVA  ++TSLGP+GMDKM+
Sbjct: 34  SHILAARAVASILKTSLGPKGMDKMM 59


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 44/84 (52%), Positives = 60/84 (71%)
 Frame = +3

Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
           G + +TNDGATILK + + +PAAK+LVELS+ QD E GDGTTSV V+   LL  AEKL+ 
Sbjct: 56  GNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVS 115

Query: 435 KGIHPTVISDGFQKALQLALQVVE 506
             IHP  I  G++K+++ A + +E
Sbjct: 116 CKIHPQTIVAGWRKSVKAAEKALE 139



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = +1

Query: 136 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQA 249
           ++ +    RLS+   A A+ D ++++LGP+GMDK++Q+
Sbjct: 14  EEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQS 51



 Score = 36.7 bits (81), Expect = 0.022
 Identities = 22/70 (31%), Positives = 41/70 (58%)
 Frame = +2

Query: 545 LLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVE 724
           L+  A T+L+SK++ QH    A +AV A+       + G G   DL  +++I+++GG + 
Sbjct: 156 LMNIARTTLSSKILVQHRDHFAKLAVDAVLR-----LKGSG---DLNAIQIIKKLGGGMV 207

Query: 725 DAELIQGLVI 754
           D+ L +G ++
Sbjct: 208 DSFLDEGFLL 217


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 35/81 (43%), Positives = 57/81 (70%)
 Frame = +3

Query: 267 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 446
           +TNDG  IL+++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  AE  L++ +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 447 PTVISDGFQKALQLALQVVEK 509
           PT I   ++ A+   + ++++
Sbjct: 61  PTQIIAAYRLAMDDMIDILKQ 81


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 33/53 (62%), Positives = 43/53 (81%)
 Frame = +1

Query: 88  PKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQ 246
           P+A     +++ + +KDK KP +IR++NI AAKAVADAIRTSLGP+GMDKMIQ
Sbjct: 2   PEAKAGRNQSHKTAFKDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQ 54


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 29/71 (40%), Positives = 49/71 (69%)
 Frame = +3

Query: 297 QMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQK 476
           ++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  AE  L++ +HPT I   ++ 
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 477 ALQLALQVVEK 509
           A+   + ++++
Sbjct: 268 AMDDMIDILKQ 278


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/85 (35%), Positives = 54/85 (63%)
 Frame = +3

Query: 264 TITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGI 443
           T+   G   ++   + HP A ++  ++ AQD   GDGTTS V+I G LL  A+  + +G+
Sbjct: 157 TMNPFGQNGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGL 216

Query: 444 HPTVISDGFQKALQLALQVVEKCQL 518
           HP ++++GF+ A + AL+V+E+ ++
Sbjct: 217 HPRLVTEGFEVAKKKALEVLEEVKV 241


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/56 (50%), Positives = 38/56 (67%)
 Frame = +3

Query: 339 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVE 506
           LS+ QD E GDGTTSV V+A  LL  AEKL+   IHP  I  G++K+++ A + +E
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 23/69 (33%), Positives = 40/69 (57%)
 Frame = +2

Query: 539 DALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGT 718
           D L+  A T+L+SK++ QH    A +AV A+       + G G   DL  +++I+++GG 
Sbjct: 72  DDLMNIARTTLSSKILVQHRDHFAKLAVDAVLR-----LKGSG---DLNAIQIIKKLGGG 123

Query: 719 VEDAELIQG 745
           + D+ L +G
Sbjct: 124 MVDSFLDEG 132


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 19/37 (51%), Positives = 31/37 (83%)
 Frame = +3

Query: 252 QGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIE 362
           +G+ TI+NDGATI+  + ++HPAAK LV+++++QD E
Sbjct: 688 RGKATISNDGATIINLLDIVHPAAKTLVDIAKSQDAE 724



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +1

Query: 136 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAAKEK 261
           D S+     +SNI+A + +ADA+RT+LGPRGMDK+I   + K
Sbjct: 649 DASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGK 690


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = +3

Query: 246 SSQGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVI 395
           SS G + ITN G+ IL+ +++ +P  +M+VE +R+     G G +  ++I
Sbjct: 31  SSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGASYFIII 80


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +3

Query: 249 SQGEVTITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDS 416
           S G   IT DG T+ K + +        A+++ +++   + EAGDGTT+  V+A ++   
Sbjct: 99  SFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATE 158

Query: 417 AEKLLQKGIHPTVIS 461
               + KG +P  +S
Sbjct: 159 GFLHVSKGANPQEVS 173


>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 318 AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKAL 482
           A++ML E+SR      GD +     ++G  L   EKLL+  +HP  I  G  K L
Sbjct: 238 ASQMLYEVSRL----LGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRL 288


>SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)
          Length = 540

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +1

Query: 58  FERLNINIMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAI-RTSLGPRGMD 234
           +E +N  I  P+   + IK +   Y+++ K  ++     +  K + +++  T LG R +D
Sbjct: 456 WEYVNKAIENPREVLERIKGDRVEYQEELKELELE----DEEKLLTESLGSTRLGKR-VD 510

Query: 235 KMIQAAKEKLQ*LMME 282
           KMI + ++KLQ L ME
Sbjct: 511 KMISSIEQKLQNLEME 526


>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 476 SPSIGFTGGRKMSTPVDLNNEDALLKAA 559
           +P + FTGG+KM TP  L  ++ ++ AA
Sbjct: 470 TPEVIFTGGKKMPTPYILAFDELIMAAA 497


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 709 YTLNDFHISEVNSCTNT--TNNRFHYCSNCLHCNGCQNS 599
           YT N  + +++N C +   ++N  HY  NC     C N+
Sbjct: 174 YTGNGTNCTDINECNSLALSSNHSHYAHNCQSDANCTNT 212


>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1597

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 460 LMVSKKPFNWLYR-WSKNVNSSGL 528
           L+V   P+NW+YR   KN N+ GL
Sbjct: 856 LLVKDTPWNWIYREGQKNGNADGL 879


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,373,011
Number of Sequences: 59808
Number of extensions: 433211
Number of successful extensions: 1213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)