Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1988
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.81 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 228 NG*D-DSSSQGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDI 359
           NG D ++ ++ E+ + NDG+  L ++ +IH A        R QD+
Sbjct: 347 NGADLETLNEPEIRVFNDGSLYLTKVQLIH-AGNYTCHAVRNQDV 390


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 130 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPR 225
           Y+   KP +  ++ INA K +  AIR  +GP+
Sbjct: 493 YRLNHKPFNFHIT-INADKPMKAAIRIFIGPK 523


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 130 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPR 225
           Y+   KP +  ++ INA K +  AIR  +GP+
Sbjct: 493 YRLNHKPFNFHIT-INADKPMKAAIRIFIGPK 523


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 741 WISSASSTVPPIRSMTFTSLR 679
           WI  AS T+P   S  FT+ +
Sbjct: 548 WIYPASMTIPGSNSAVFTNYK 568


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 284 CSIISYCNFSLAA*IILSIPRG 219
           C+  +YC FS    I+  +P G
Sbjct: 143 CNFKAYCLFSFLNTIVYCVPAG 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,185
Number of Sequences: 438
Number of extensions: 4344
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)