Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1988
(791 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 114 7e-26
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 106 1e-23
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 99 3e-21
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 97 9e-21
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 94 8e-20
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 86 2e-17
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 82 5e-16
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 80 1e-15
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 79 3e-15
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 79 3e-15
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 50 2e-06
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 48 7e-06
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 48 7e-06
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 47 2e-05
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 46 2e-05
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 41 8e-04
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 40 0.002
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 39 0.003
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 39 0.003
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 35 0.054
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 35 0.071
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 32 0.38
At4g11870.1 68417.m01888 hypothetical protein 30 1.5
At2g43040.1 68415.m05341 calmodulin-binding protein similar to p... 29 2.7
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote... 29 3.5
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 29 4.7
At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa... 28 6.2
At2g38470.1 68415.m04725 WRKY family transcription factor contai... 28 8.2
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 114 bits (274), Expect = 7e-26
Identities = 56/87 (64%), Positives = 67/87 (77%)
Frame = +3
Query: 243 SSSQGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 422
S++ GEV ITNDGATIL +M V+ PAAKMLVELS++QD AGDGTT+VVVIAGALL +
Sbjct: 58 STANGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQ 117
Query: 423 KLLQKGIHPTVISDGFQKALQLALQVV 503
LL GIHPTVISD KA A+ ++
Sbjct: 118 SLLTNGIHPTVISDSLHKACGKAIDIL 144
Score = 92.7 bits (220), Expect = 3e-19
Identities = 42/81 (51%), Positives = 66/81 (81%)
Frame = +2
Query: 509 MSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRD 688
M+ PV+L + D+L+K+A+TSLNSKVVSQ+ST+LAP+AV A+ +V++P + VDLRD
Sbjct: 147 MAVPVELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEI---VDLRD 203
Query: 689 VKVIERIGGTVEDAELIQGLV 751
+K+++++GGTV+D ++GLV
Sbjct: 204 IKIVKKLGGTVDDTHTVKGLV 224
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = +1
Query: 82 MAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAA 252
MA K G KA S V D + DIR +NIN+A+AV+DA+RTSLGP+GMDKMI A
Sbjct: 8 MASKPRGS--KAESFV--DNKRREDIRFANINSARAVSDAVRTSLGPKGMDKMISTA 60
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 106 bits (255), Expect = 1e-23
Identities = 49/85 (57%), Positives = 70/85 (82%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
G++TITNDGATIL+QM V + AK++VELSR+QD E GDGTT VVV+AGALL+ AE+ L
Sbjct: 62 GDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLD 121
Query: 435 KGIHPTVISDGFQKALQLALQVVEK 509
+GIHP I++G++ A ++A++ +E+
Sbjct: 122 RGIHPIRIAEGYEMASRVAVEHLER 146
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/77 (38%), Positives = 50/77 (64%)
Frame = +2
Query: 524 DLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIE 703
D+NN + L++ T+L+SK+V++ LA IAV+A+ AV + + +DL +KV
Sbjct: 154 DVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVAD--LERRDVNLDL--IKVEG 209
Query: 704 RIGGTVEDAELIQGLVI 754
++GG +ED ELI G++I
Sbjct: 210 KVGGKLEDTELIYGILI 226
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +1
Query: 133 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQ 246
K + + D + +NI A KAVA +R+SLGP+GMDKM+Q
Sbjct: 21 KTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQ 58
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/85 (52%), Positives = 62/85 (72%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
G + +TNDG IL+++ V HPAAK ++ELSR QD E GDGTTSV+V+AG +L AE L+
Sbjct: 53 GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLE 112
Query: 435 KGIHPTVISDGFQKALQLALQVVEK 509
K HPTVI + KAL+ ++ V++K
Sbjct: 113 KNYHPTVICRAYIKALEDSIAVLDK 137
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +2
Query: 506 KMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLR 685
K++ +D+N+ +L + + +K SQ ++A +A+ A V + G+ VD++
Sbjct: 137 KIAMSIDINDRSQVLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGL-REVDIK 195
Query: 686 DVKVIERI-GGTVEDAELIQGLV 751
+E++ GG ED+E+++G++
Sbjct: 196 KYIKVEKVPGGQFEDSEVLKGVM 218
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 169 NINAAKAVADAIRTSLGPRGMDKMI 243
NI A+KAVAD IRT+LGPR M KM+
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLKML 48
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 97.5 bits (232), Expect = 9e-21
Identities = 46/85 (54%), Positives = 63/85 (74%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
G+VTITNDGATIL+ + V HPAAK+LVEL+ QD E GDGTTSVV++A LL A L++
Sbjct: 53 GDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVR 112
Query: 435 KGIHPTVISDGFQKALQLALQVVEK 509
IHPT I G++ A++ + + +E+
Sbjct: 113 NKIHPTSIISGYRLAMRESCKYIEE 137
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +1
Query: 118 NSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 243
N + D+ D+R N+ A +AV++ ++TSLGP G+DKM+
Sbjct: 7 NPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKML 48
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 94.3 bits (224), Expect = 8e-20
Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Frame = +3
Query: 243 SSSQGE-VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSA 419
S+ +G VT+TNDGATILK + + +PAAK+LV++S+ QD E GDGTTSVVV+AG LL A
Sbjct: 49 STGRGHAVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREA 108
Query: 420 EKLLQKGIHPTVISDGFQKALQLALQVVEK 509
EKL+ IHP I G++ A + A + K
Sbjct: 109 EKLVASKIHPMTIIAGYRMASECARNALLK 138
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Frame = +1
Query: 127 VYKD---KSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQA 249
++KD + K R+++ A A++D ++++LGP+GMDK++Q+
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQS 49
Score = 34.3 bits (75), Expect = 0.094
Identities = 22/70 (31%), Positives = 40/70 (57%)
Frame = +2
Query: 545 LLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVE 724
LLK A T+L SK++SQ A +AV A V + +L +++I++ GG+++
Sbjct: 154 LLKIAMTTLCSKILSQDKEHFAEMAVDA--------VFRLKGSTNLEAIQIIKKPGGSLK 205
Query: 725 DAELIQGLVI 754
D+ L +G ++
Sbjct: 206 DSFLDEGFIL 215
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/86 (43%), Positives = 62/86 (72%)
Frame = +3
Query: 252 QGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLL 431
+G VTI+NDGATI+K + ++HPAAK+LV+++++QD E GDGTT+VV++A L A+ +
Sbjct: 56 KGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFI 115
Query: 432 QKGIHPTVISDGFQKALQLALQVVEK 509
+ G+H + ++ A LA+ V++
Sbjct: 116 EDGVHAQNLIRSYRTASTLAIAKVKE 141
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1
Query: 163 LSNINAAKAVADAIRTSLGPRGMDKMIQAAK 255
+SNINA AV D +RT+LGPRGMDK+I K
Sbjct: 26 VSNINACTAVGDVVRTTLGPRGMDKLIHDDK 56
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 81.8 bits (193), Expect = 5e-16
Identities = 35/81 (43%), Positives = 57/81 (70%)
Frame = +3
Query: 267 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 446
+TND ATI+ ++ + HPAAK+LV ++AQ E GDG + AG LL +AE+L++ G+H
Sbjct: 65 VTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLH 124
Query: 447 PTVISDGFQKALQLALQVVEK 509
P+ I G+ KA+ A++++E+
Sbjct: 125 PSEIISGYTKAVSKAVEILEQ 145
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 130 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAAKEKL 264
Y+ S + + NI A K ++ RTSLGP GM+KM+ +KL
Sbjct: 19 YRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKL 63
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/70 (52%), Positives = 55/70 (78%)
Frame = +3
Query: 300 MSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKA 479
M V + AK++VELSR+QD E GDGTT VVV+AGALL+ AE+ L +GIHP I++G++ A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 480 LQLALQVVEK 509
++A++ +E+
Sbjct: 61 SRVAVEHLER 70
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/77 (38%), Positives = 50/77 (64%)
Frame = +2
Query: 524 DLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIE 703
D+NN + L++ T+L+SK+V++ LA IAV+A+ AV + + +DL +KV
Sbjct: 78 DVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVAD--LERRDVNLDL--IKVEG 133
Query: 704 RIGGTVEDAELIQGLVI 754
++GG +ED ELI G++I
Sbjct: 134 KVGGKLEDTELIYGILI 150
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/84 (40%), Positives = 56/84 (66%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
G++ +T DG T+LK+M + +P A M+ + AQD +GDGTTS V+ G L+ +E+ +
Sbjct: 51 GDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCID 110
Query: 435 KGIHPTVISDGFQKALQLALQVVE 506
+G+HP V+ DGF+ A + LQ ++
Sbjct: 111 EGMHPRVLVDGFEIAKRATLQFLD 134
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 172 INAAKAVADAIRTSLGPRGMDKMI 243
INAAK + D ++++LGP+G KM+
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKML 46
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/84 (40%), Positives = 56/84 (66%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 434
G++ +T DG T+LK+M + +P A M+ + AQD +GDGTTS V+ G L+ +E+ +
Sbjct: 51 GDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCID 110
Query: 435 KGIHPTVISDGFQKALQLALQVVE 506
+G+HP V+ DGF+ A + LQ ++
Sbjct: 111 EGMHPRVLVDGFEIAKRATLQFLD 134
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 172 INAAKAVADAIRTSLGPRGMDKMI 243
INAAK + D ++++LGP+G KM+
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKML 46
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +3
Query: 246 SSQGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLD 413
S G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A L+
Sbjct: 93 SKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIA 152
Query: 414 SAEKLLQKGIHPTVISDGFQKALQLALQVVEK 509
K++ G +P +I+ G +K + + ++K
Sbjct: 153 EGVKVVAAGANPVLITRGIEKTTKALVAELKK 184
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +3
Query: 246 SSQGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLD 413
S G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A +
Sbjct: 97 SKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIA 156
Query: 414 SAEKLLQKGIHPTVISDGFQKALQLALQVVEK 509
K++ G +P +I+ G +K + + ++K
Sbjct: 157 EGVKVVAAGANPVLITRGIEKTAKALVTELKK 188
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +3
Query: 246 SSQGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLD 413
S G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A +
Sbjct: 97 SKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIA 156
Query: 414 SAEKLLQKGIHPTVISDGFQKALQLALQVVEK 509
K++ G +P +I+ G +K + + ++K
Sbjct: 157 EGVKVVAAGANPVLITRGIEKTAKALVTELKK 188
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = +3
Query: 246 SSQGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLD 413
S G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A +
Sbjct: 93 SKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIA 152
Query: 414 SAEKLLQKGIHPTVISDGFQK 476
K++ G +P +I+ G +K
Sbjct: 153 EGVKVVAAGANPVLITRGIEK 173
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +3
Query: 255 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIE----AGDGTTSVVVIAGALLDSAE 422
G I NDG T+LK++ + P + V+L R + AGDG+T+ +++A L+
Sbjct: 84 GPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGI 143
Query: 423 KLLQKGIHPTVISDGFQK 476
K++ G +P ++ G +K
Sbjct: 144 KVISAGTNPIQVARGIEK 161
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/86 (22%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +3
Query: 261 VTITNDGATILKQM----SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKL 428
+ + NDG TI K + ++ + A ++ E++ + AGDGTT+ +++A ++ +
Sbjct: 78 IKVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLA 137
Query: 429 LQKGIHPTVISDGFQKALQLALQVVE 506
+ G + + +G K ++ ++V++
Sbjct: 138 IAFGANAVSVKNGMNKTVKELVRVLQ 163
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1
Query: 133 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDK 237
K + K D + +NI+A KAVA +R+SLGP+GM+K
Sbjct: 21 KTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +3
Query: 246 SSQGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGALLD 413
SS G IT DG T+ K +S A A+++ +++ A + AGDGTT V+ A+L
Sbjct: 72 SSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTTCATVLTQAILI 131
Query: 414 SAEKLLQKGIHPTVISDGFQKAL 482
K + G++ + G A+
Sbjct: 132 EGCKSVAAGVNVMDLRVGINMAI 154
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 GEVTITNDGATILKQM----SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 422
G + NDG TI + + ++ + A ++ E++ + AGDGTT+ ++A ++
Sbjct: 89 GSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGL 148
Query: 423 KLLQKGIHPTVISDGFQKALQLALQVVEK 509
+ G +P + G K +Q ++ ++K
Sbjct: 149 LSVTSGANPVSLKRGIDKTVQGLIEELQK 177
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 35.1 bits (77), Expect = 0.054
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 249 SQGEVTITNDGATILKQMS----VIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDS 416
S G +T DG T+ K + + + A ++ +++ A + AGDGTT V+ A+
Sbjct: 74 SWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTE 133
Query: 417 AEKLLQKGIHPTVISDGFQKAL 482
K + G++ + G + A+
Sbjct: 134 GCKSVAAGMNAMDLRRGIKLAV 155
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +3
Query: 249 SQGEVTITNDGATILKQMS----VIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDS 416
S G +T DG T+ K + + + A ++ +++ A + AGDGTT V+ A+
Sbjct: 73 SWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAE 132
Query: 417 AEKLLQKGIHPTVISDGFQKAL 482
K + G++ + G A+
Sbjct: 133 GCKSVAAGMNAMDLRRGISMAV 154
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 553 GSCNITKFQSSFTTLNYFGTHCSASNSSSNGTYC 654
G CN + S+F+TL G HC + G +C
Sbjct: 407 GYCNAVQPNSTFSTLTKCGNHCGKGKEPNQGCHC 440
>At4g11870.1 68417.m01888 hypothetical protein
Length = 74
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 744 PWISSASSTVPPIRSMTFTSLRSTLAPTPLTIGSIT 637
P ++ ++ VP I S T T T+A TP+T+G+ T
Sbjct: 37 PAVTPTTTVVPAITSATTTVTAPTMAVTPVTMGTPT 72
>At2g43040.1 68415.m05341 calmodulin-binding protein similar to
pollen-specific calmodulin-binding protein MPCBP
GI:10086260 from [Zea mays]; contains Pfam profile
PF00515: TPR Domain
Length = 704
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 297 QMSVIHPAAKMLVELS--RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGF 470
Q SV AA +++E +A+ ++ T ++LDS EK+ Q+GI + +
Sbjct: 113 QQSVSQHAANLVLEAIYLKAKSLQKLGRITEAAHECKSVLDSVEKIFQQGIPDAQVDNKL 172
Query: 471 QKALQLALQVV 503
Q+ + A++++
Sbjct: 173 QETVSHAVELL 183
>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
kinase, putative
Length = 812
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 432 QKGIHPTVISDGFQKALQLALQVVEKCQL 518
QK + PTV++ Q++L +A+ + KC L
Sbjct: 748 QKIVSPTVLTTSSQESLSIAISIANKCVL 776
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 400 PAITTTDVVPSPASIS*ARDNSTNIFAAG*ITLICFKIVAPSLVI 266
P T TD+VP+ A + + I AAG +T C +I+ P L I
Sbjct: 274 PEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFC-RILNPELAI 317
>At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 276
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = -2
Query: 724 FYSSTYTLNDFHISEVNSCTNTTNNRFHYCSNCLHCNG 611
F+ + FH + C ++F +C NC C G
Sbjct: 104 FFDDDISKEQFHCDDCGICRVGGRDKFFHCQNCGACYG 141
>At2g38470.1 68415.m04725 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain;
Length = 519
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 778 HSHWLPMRNDQSLD*LSIFYSSTYTLNDFHISEVNSCTNTTNNRFH 641
H+H P +S S F+S+ Y + H + +S +NN FH
Sbjct: 237 HNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFH 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,735,177
Number of Sequences: 28952
Number of extensions: 304438
Number of successful extensions: 902
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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