Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1985
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    31   0.25 
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    30   0.33 
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    28   1.3  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   1.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   4.1  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   5.4  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   5.4  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   7.1  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   9.4  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   9.4  

>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 13/63 (20%), Positives = 31/63 (49%)
 Frame = +1

Query: 298 KQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQISKTKAA 477
           + E  +PE ++ W+E+Q                  ++ A+K ++D+Y++  ++  K  A 
Sbjct: 100 EDESGDPEPVRKWKEDQMKRIQERDESSKKLRESNIEKARKAIDDFYENFNDKRDKVIAK 159

Query: 478 NRE 486
           +R+
Sbjct: 160 SRK 162


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 412 AKKELEDWYKSHEE-QISKTKAANRESAKNAERDKLEDLKVVWRKEMNGPGFLSFVTLDP 588
           A  EL++W KSH    I K   ++ ESA  A ++  + +  V    +N   F SF T+  
Sbjct: 42  AATELQEWSKSHSNVHIIKLDISSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLN 101

Query: 589 VEEGMWHAY 615
             + +W+++
Sbjct: 102 TPDDVWNSH 110


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +1

Query: 412 AKKELEDWYKSHEE----QISKTKAANRESAKNAERDKLEDLKVVWRKEMNGPGFLSFVT 579
           A  EL++W KSH      ++  T   +   A  +    ++ + V+W   +N     S+ T
Sbjct: 42  AATELQEWSKSHPNVKTVELDVTSQQSANEAAQSVAKAVDGIDVLW---LNSGICQSYYT 98

Query: 580 LDPVEEGMWHAYGQ 621
           +    E +W+A+ Q
Sbjct: 99  VMEAPEEVWNAHYQ 112


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 412 AKKELEDWYKSHEEQISKTKAANRESAKNAERDKLEDLKVV 534
           AK  L+ WYK  +EQ  +++AA +    N +   LE  KV+
Sbjct: 9   AKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVI 49


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 143  LEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 244
            L+D      PP  ++   N   D+  +P+ S+FD
Sbjct: 2417 LKDAANYGLPPITMNVKVNDTGDYSNIPTVSSFD 2450


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +1

Query: 415 KKELEDWYKSHEEQISKTKAANRESAKNAERDKLEDLK 528
           KK++ DWY   +E+I++    NRE+ ++ + +   +++
Sbjct: 682 KKDV-DWYTEEKEKIARQLVINREAFEDMDPESRAEIE 718


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 100 WIDLRFNETVSKIIHFQISFWNKSINRMRVDFQ 2
           W++   N+TV++II       ++S+N M VDF+
Sbjct: 621 WVETEANDTVTEIISSDSESLSQSLN-MAVDFR 652


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 561 PGPIHFLPPHYFQILEL 511
           P P+ FL PHYF ++++
Sbjct: 94  PKPLKFLRPHYFTLVKI 110


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 92  VDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 244
           V+   D  + E+N     + E+ETS  PPA+S ST   ++   + S++  +
Sbjct: 454 VEVHTDANSPEENNTPVTKKEVETS-KPPAVSGSTPPVNEAAVIESSNTLE 503


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 176 PAISTSTNGFDDFVEVPSASA 238
           P I +ST   +DFVEVP  SA
Sbjct: 203 PQIFSSTLYINDFVEVPGTSA 223


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 421 LSWLSEAFLASFVLPQHLSLLIFSF 347
           +SW++ A L     PQ  +LL+F F
Sbjct: 705 MSWIAGALLMHLPAPQAFALLVFLF 729


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 327 QNMARRTKEKIRRERC*GRTKEARNASDSQERTGGL 434
           + + +R  E+IRRE+   R  EA+  ++  +  GGL
Sbjct: 606 EEINKRNAERIRREKEAIRINEAKKLAEELKAKGGL 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,129
Number of Sequences: 5004
Number of extensions: 63403
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)