Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1985
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0255 + 1888193-1888914,1890247-1890460,1890535-1890615,189... 30 1.8
11_01_0257 + 1972111-1972832,1974214-1974427,1974502-1974582,197... 30 1.8
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 30 1.8
05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453 30 2.4
04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061 29 5.6
12_02_0635 - 21430245-21431156 28 7.4
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 28 7.4
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 28 7.4
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 28 9.8
08_02_0578 - 18943497-18943664 28 9.8
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 28 9.8
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 28 9.8
>12_01_0255 +
1888193-1888914,1890247-1890460,1890535-1890615,
1890753-1890842,1890950-1891036,1891553-1891653,
1891966-1892011,1892366-1892440,1892557-1892640,
1892721-1892936,1893216-1893358,1893488-1893629
Length = 666
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 406 QIAKKELEDWYKSHEEQISKTKAANRESAKNAERDKLEDLKVVW 537
+I KE ED++K ++E K K E + D++ KV W
Sbjct: 451 EITDKEFEDFFKRYKEVAEKKKRVTDEDIEALLSDEIFQPKVFW 494
>11_01_0257 +
1972111-1972832,1974214-1974427,1974502-1974582,
1974720-1974809,1974911-1974997,1975484-1975584,
1975892-1975937,1976272-1976346,1976459-1976542,
1976620-1976861,1977067-1977258,1977391-1977532
Length = 691
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 406 QIAKKELEDWYKSHEEQISKTKAANRESAKNAERDKLEDLKVVW 537
+I KE ED++K ++E K K E + D++ KV W
Sbjct: 451 EITDKEFEDFFKRYKEVAEKKKRVTDEDIEALLSDEIFQPKVFW 494
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 59 DDFGDSFVEPEVDPAADFLAREQNQLAGLEDE---LETSAPPP 178
++ GD EPE + ADF+ E+ + LEDE E AP P
Sbjct: 56 EEGGDDEAEPEDESDADFVGDEEEEEEDLEDEDDLEEVKAPRP 98
>05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453
Length = 494
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Frame = +3
Query: 501 RARQARGSESSVEEGNEWARVSELCDFGPRRGR-----DVARLRSIVLQLKQAGSRP 656
+A RG E+ +EWA + D GP D A + KQAG RP
Sbjct: 200 QAEVVRGGGGGGEDIDEWAEACAVFDLGPETAEGSDNADAAAAEGDMRSAKQAGKRP 256
>04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061
Length = 346
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 288 CWSGSQWSIIQRPLASNADALGTSTKSSNPFVD 190
CW + ++Q L A AL S +S++PF+D
Sbjct: 33 CWMLHMFDVVQSKLICRAMALHFSWRSTSPFLD 65
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 584 TPSRK--GCGTLTVNCASAQASWISPKLPITC 673
TP R GC LT+ C+ S+ SP P++C
Sbjct: 272 TPPRPYVGCPRLTIPCSCENQSFKSPAKPLSC 303
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 439 KSHEEQISKTKAANRESAKNAERDKLEDLKVVWRKEMN 552
+ HE +I+ ++A E A N+ +D L+D+ + ++ N
Sbjct: 793 EQHEAEIASSRATAEEHASNSSKDLLQDVDNMLQEARN 830
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +1
Query: 415 KKELEDWYKSHEEQISKTKAANRESAKNAERDKLEDLKVVWRKEM-NGPGFLSFVTLDPV 591
K D S +E+ + + ++ A NA LK ++++ N P F D
Sbjct: 171 KDRRSDVENSEDERRRLSIGSLKKKALNASNKLTHSLKKRGKRKVENRPSFTIEDVRDEE 230
Query: 592 EEGMWHAYGQLCFSSSKLDLAQTTHHVLLKWLE 690
EE ++ Q FS + L +H+LL++L+
Sbjct: 231 EERAVFSFQQELFSRNLLPDKHNDYHMLLRFLK 263
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +1
Query: 526 KVVWRKEMNGPGFLSFVTLDPVEEGMWHAYG---QLCFSSSKLDLAQTTHH--VLLKWLE 690
+V+W+ PG L+F L + WH G S++D A H+ + WLE
Sbjct: 610 RVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLE 669
Query: 691 I 693
+
Sbjct: 670 L 670
>08_02_0578 - 18943497-18943664
Length = 55
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 206 DDFVEVPSASAFDANGRWMMLHWDPLQQ 289
DD V +P S +GRW + W P QQ
Sbjct: 22 DDSVPLPPGSGVGGSGRW--IRWGPQQQ 47
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 460 KSVLHVICTSPPVLSW 413
K+VLH+ C PP +SW
Sbjct: 10 KAVLHMDCEKPPAISW 25
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 574 VTLD-PVEEGMWHAYGQLCFSSSKLDLAQTTHHVLLKWLEITSQF 705
V LD P GM ++ + +++ L A H LLKW E+ +F
Sbjct: 136 VYLDSPAGVGMSYSLNKSDYTTGDLKTAADAHTFLLKWFELYPEF 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,110,000
Number of Sequences: 37544
Number of extensions: 417909
Number of successful extensions: 1418
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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