Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1985
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light ... 40 0.003
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 32 0.54
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 32 0.54
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 1.7
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 1.7
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z92777-3|CAB07169.1| 351|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light
chain protein 1 protein.
Length = 226
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 307 REEPEKIKIWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQISKTKAANRE 486
R E EKI++W+ +Q + AKKELE+WYK E+ + + N +
Sbjct: 115 RIEAEKIRLWKAQQEQLLSKKDEAEEKKKIELRANAKKELEEWYKQREKTLQLSHDENLK 174
Query: 487 SAKN 498
+ K+
Sbjct: 175 NEKS 178
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 95 DPAADFLAREQNQLAGLEDELETSAPPPAISTS 193
DP ADFLAREQN A + APP A + +
Sbjct: 3 DPVADFLAREQNLFADFD-----GAPPAAAAAN 30
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 122 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 244
EQNQ GL++ L P + + NG D E PS+ F+
Sbjct: 399 EQNQCVGLDNGLHAIGCSPRVLSCQNGHVDIFECPSSLVFN 439
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 122 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 244
EQNQ GL++ L P + + NG D E PS+ F+
Sbjct: 399 EQNQCVGLDNGLHAIGCSPRVLSCQNGHVDIFECPSSLVFN 439
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 86 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 211
P V P + + +N AGL D LE + PA +N FDD
Sbjct: 330 PPVAPRRNPVVSPKNSTAGLLDGLELGSAEPAKKAPSNIFDD 371
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 86 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 211
P V P + + +N AGL D LE + PA +N FDD
Sbjct: 330 PPVAPRRNPVVSPKNSTAGLLDGLELGSAEPAKKAPSNIFDD 371
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 406 QIAKKELEDWYKSHEEQISKTKAANRESAKNAERDKLED 522
++ KKE ++W K EE K KA +E + + + E+
Sbjct: 534 EVDKKEFDEWEKEQEELKKKEKAEKKEKEEKKKTEGEEE 572
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical
protein T14G8.3a protein.
Length = 921
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 406 QIAKKELEDWYKSHEEQISKTKAANRESAKNAERDKLED 522
++ KKE ++W K EE K KA +E + + + E+
Sbjct: 550 EVDKKEFDEWEKEQEELKKKEKAEKKEKEEKKKTEGEEE 588
>Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical
protein F40G12.10 protein.
Length = 438
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = -1
Query: 625 TIDRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRA 512
++ ++R + L RR KS+S+ + + P+S L +DP++
Sbjct: 28 SMSKERGSELSRRPQKSRSNSKQKATGPTSALPTDPKS 65
>Z92777-3|CAB07169.1| 351|Caenorhabditis elegans Hypothetical
protein C17H1.5 protein.
Length = 351
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Frame = +1
Query: 430 DWYK---SHEEQISKTKAANRESAKNAERDKLED 522
D+Y+ + E+++S ++AANRES + E DK+ D
Sbjct: 5 DYYRELEASEQRLSDSRAANRESIRTVE-DKISD 37
>Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical
protein C17H1.9 protein.
Length = 353
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 439 KSHEEQISKTKAANRESAKNAERDKLEDLK 528
++ E ++S+ +AANRES K + DK+ D K
Sbjct: 11 EASERRLSELRAANRESVKRVQ-DKITDEK 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,329,632
Number of Sequences: 27780
Number of extensions: 359998
Number of successful extensions: 1343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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