Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1985
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.15 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.15 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    26   0.46 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.46 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    26   0.46 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    26   0.46 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 101 AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGR--WMMLHW 274
           A+D   R+   + GLE+E E +      S +  GFDD++   ++   D N R  W   +W
Sbjct: 229 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM---ASLTPDTNRRNPWFSEYW 285

Query: 275 D 277
           +
Sbjct: 286 E 286


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 101 AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGR--WMMLHW 274
           A+D   R+   + GLE+E E +      S +  GFDD++   ++   D N R  W   +W
Sbjct: 319 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM---ASLTPDTNRRNPWFSEYW 375

Query: 275 D 277
           +
Sbjct: 376 E 376


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 540 PPHYFQILELVSLCILSRFPVGSFSFGNLFFM 445
           PPH  ++ + + +     FPV  F F   FF+
Sbjct: 452 PPHPIRVAKTIDVIARITFPVAYFMFLTFFFI 483


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 540 PPHYFQILELVSLCILSRFPVGSFSFGNLFFM 445
           PPH  ++ + + +     FPV  F F   FF+
Sbjct: 438 PPHPIRVAKTIDVIARITFPVAYFMFLTFFFI 469


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 540 PPHYFQILELVSLCILSRFPVGSFSFGNLFFM 445
           PPH  ++ + + +     FPV  F F   FF+
Sbjct: 472 PPHPIRVAKTIDVIARITFPVAYFMFLTFFFI 503


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 540 PPHYFQILELVSLCILSRFPVGSFSFGNLFFM 445
           PPH  ++ + + +     FPV  F F   FF+
Sbjct: 421 PPHPIRVAKTIDVIARITFPVAYFMFLTFFFI 452


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 451 LHVICTSPPVLSWLSEAFLASFVLPQHLSLLIFSFVLLAI 332
           LH++     V+ W+   FL +F+     S +  +F+L AI
Sbjct: 51  LHLLYQDVHVMIWIGFGFLMTFLRRYGQSAVGLTFLLGAI 90


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 460 KSVLHVICTSPPVLSWLSEAFLASFVLPQHLSLLIFSFVLLA 335
           +S LH+  TSPP  S  S+A  +    PQ  SLL  +   LA
Sbjct: 668 QSQLHLHLTSPPARSPSSQAQASQ--CPQTASLLSSTHSTLA 707


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,848
Number of Sequences: 438
Number of extensions: 4239
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)