Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1984
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.3  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   5.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   7.0  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.3  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 293  WFAICSQHFQTVKLIYPVCQLYMDTY*EFRHLARKKYIWRIITGR 159
            WF +     Q   L YP    +  T+ E RH+   + I  +I+GR
Sbjct: 1238 WFVVWEGSPQNFALSYPYILAFEPTFIEIRHVETSELI-HVISGR 1281


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 296 LWFAI--CSQHFQTVKLIYPVCQLYMDTY*EFRHLARKKYIWRI 171
           +W A+  C  +  TV ++YP+  +++  +   RH    K +W +
Sbjct: 260 IWLALSKCLNYVNTV-IVYPIFVIFVFVWIYMRHYLNFKIMWAV 302


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 278 SRSRTKEWLYPPNDFHCTSL 337
           S S +KEWL     +HCT L
Sbjct: 342 SHSTSKEWLSSLEQYHCTYL 361


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 271 CCEQIANQRMALPTKRLPLHF 333
           CC +IA +R   P   LPL+F
Sbjct: 116 CCREIARRRSLSPLLILPLNF 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,387
Number of Sequences: 5004
Number of extensions: 56370
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)