Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1984
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671...    31   1.0  
01_01_0637 + 4816460-4816647,4816737-4817023,4817121-4817250,481...    31   1.4  
04_01_0619 - 8125611-8127967,8128449-8130123                           29   5.5  
11_08_0098 - 28334865-28336114,28336228-28336357                       28   7.3  

>08_02_1157 +
           24765719-24766544,24766569-24766637,24767031-24767180,
           24767296-24768503
          Length = 750

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 144 FKIVSSPSYNPPYIFFSG*VPKFLVGVHV*LANRVYELDS 263
           FK+V  P+Y+PP +F +G  P + V   + LA RV  LD+
Sbjct: 56  FKLVCDPAYDPPKLFMNG--PGYEVH-KIKLARRVLHLDT 92


>01_01_0637 +
           4816460-4816647,4816737-4817023,4817121-4817250,
           4817331-4817394,4817467-4817514
          Length = 238

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 614 GSESRPAERSGEKLSGLIHCIGCTSNFLPSSSS--TVAGVPKPAPSVRAEGVNA 769
           G E   A  +GE  SGL  C+G  + F  SSSS  +      PA ++R+ G NA
Sbjct: 8   GREEEDAAAAGE--SGLELCLGLPAYFSSSSSSKPSEGSTAAPAFALRSNGTNA 59


>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 372 SYSAQILTP-GGVREVQWKSFGG*SHSLVRDLLTTFSNCQ 256
           S++  + T  G  R ++W + GG       D L T SNCQ
Sbjct: 409 SFTGSVPTALGSSRSIEWFNIGGNYQEGSLDFLATLSNCQ 448


>11_08_0098 - 28334865-28336114,28336228-28336357
          Length = 459

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 617 SESRPAERS--GEKLSGLIHCIGCTSNFLPSSSSTVAGVPKPA-PSVRAEGVNARFI 778
           ++S+P  +   G  + GL+H    T+N + +++S  AG  + A P +RA G + + +
Sbjct: 314 AKSKPKNKGIKGWSIWGLLHKKSSTTNSVGATASAFAGEARAAPPELRARGYDGQML 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,390,768
Number of Sequences: 37544
Number of extensions: 378435
Number of successful extensions: 942
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)