Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1983
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    36   0.006
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    30   0.37 
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    28   1.5  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    27   2.6  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    25   8.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.0  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = +2

Query: 287 DAIA-TKITLLFRTLNYTLGGNTLKKGLRTFLLEHKYKTFVGDDIWNALTKSAIDD 451
           DAI+ +K + + R ++  +G +T  KG++ ++ +H+Y   V +D+W AL+  +  D
Sbjct: 398 DAISYSKGSCVIRMVSKYVGEDTFIKGIQKYISKHRYGNTVTEDLWAALSAESGQD 453



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
 Frame = +3

Query: 3   NWGLIVFKESEL----SNCKTVL------LVNEVLYQWLGVYVTPAWWSDAHINK 137
           NWGL+ ++ + +     +  TV+      + +E+ +QW G  VT  +W    +N+
Sbjct: 285 NWGLVTYRLAAILVSEDSAATVIERVAEVVQHELAHQWFGNLVTMQFWDGLWLNE 339


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 619 LTWWLPVVIVREDNLDFSKTTPL-VWMKT 702
           + WWLP V  +E     S   PL  WMKT
Sbjct: 273 IPWWLPAVASKEHRKSLSSFIPLPKWMKT 301


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 81  QWLGVYVTPAWWSD 122
           QW+GVY+ P  WSD
Sbjct: 392 QWIGVYLIPKAWSD 405


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 WLGYGRRPAHRWPLLYLL 238
           W+  G +PA  WP+LY +
Sbjct: 88  WVPAGEKPAEGWPVLYFI 105


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 218 TDGPVSVHIRAIVDLKINLNSQRID*GFVYMSVGP 114
           +D PV  H  ++VD  I L S  +D  F Y+ + P
Sbjct: 201 SDIPVEQH-ESLVDFIIRLYSVYVDCQFTYLEINP 234


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 269  FLNADTFAVLIVNRVKATDG 210
            + N D +A L+VN VK T+G
Sbjct: 1653 YFNVDAYASLLVNVVKYTEG 1672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,380
Number of Sequences: 5004
Number of extensions: 57492
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)