Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1983
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660...    33   0.29 
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008...    32   0.39 
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    29   4.8  
01_06_1620 + 38697960-38698131,38698532-38700732                       28   8.4  

>02_02_0080 +
           6598427-6598663,6599246-6599391,6599567-6599669,
           6600407-6600593,6600699-6600792,6601290-6601443,
           6601751-6601855,6601937-6602053,6602248-6602361,
           6602891-6603073,6603207-6603486,6603565-6603686,
           6603763-6603860,6603941-6604118,6604439-6604553,
           6604656-6604723,6604825-6604902,6604986-6605060,
           6605156-6605338
          Length = 878

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
 Frame = +3

Query: 3   NWGLIVFKESEL---------SNCKTVLLV--NEVLYQWLGVYVTPAWWSDAHINKAL-- 143
           N+GL+ ++E+ L         +N + V +V  +E+ +QW G  VT  WW+   +N+    
Sbjct: 282 NYGLVTYRETALLFDEKHSAAANKQRVAVVVAHELAHQWFGNLVTMEWWTHLWLNEGFAT 341

Query: 144 -VNSLAVEIYF 173
            V+ LA + +F
Sbjct: 342 WVSYLAADNFF 352


>09_03_0039 +
           11799277-11799486,11799565-11799710,11800758-11800860,
           11800996-11801182,11801299-11801392,11801530-11801683,
           11801963-11802067,11802151-11802267,11802688-11802801,
           11803171-11803260,11803875-11804057,11809196-11809550,
           11809574-11809643,11809993-11810167,11810251-11810351,
           11810390-11810516,11810639-11810716,11811926-11812270
          Length = 917

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
 Frame = +3

Query: 3   NWGLIVFKESEL------SNCKT-----VLLVNEVLYQWLGVYVTPAWWSDAHINKAL-- 143
           N+GL+ ++E  L      S+  T     + + +E+ +QW G  VT  WW+   +N+    
Sbjct: 273 NYGLVTYREIYLLFDEQSSSASTKQNVAITVAHELAHQWFGNLVTMEWWTHLWLNEGFAT 332

Query: 144 -VNSLAVEIYF 173
            ++ LAV+ +F
Sbjct: 333 WMSYLAVDSFF 343


>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -2

Query: 600 VVWTIT*EYFLSKHNSFPIILPFNSQKWQSIFSIQLLATIFR---SMSLLILPSSIADLV 430
           V W +    FL       +    N Q W+ +  I    TIFR   S+S L + +++  LV
Sbjct: 44  VAWQLVKRLFLGTLREAEVER-LNEQAWREVVEILFAVTIFRQDFSVSFLAMVAALL-LV 101

Query: 429 SAFHISSPTKVLYL 388
            A H  +  +V Y+
Sbjct: 102 KALHWLAQKRVEYI 115


>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 562 LTQKVFLRDRPHDLPDADRLTWWLPVVIV 648
           L+  +F+R    +LP + ++ WW+  +I+
Sbjct: 425 LSNSIFIRLSASELPQSGKMKWWIVGIII 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,141,041
Number of Sequences: 37544
Number of extensions: 352753
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)