Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1983
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.7  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 410 HQQRSCIYVQARKSLSLSSVYFHRVYSS 327
           HQQ  C   + +   S S  Y  +VY S
Sbjct: 1   HQQFHCAAAEGQAKKSFSCKYCEKVYVS 28


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 131 YMSVGPPSRSHVHSQPLV 78
           Y  V PPS  H  S PL+
Sbjct: 510 YHHVAPPSGHHASSAPLL 527


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 655 PLLRSQPGATTSTCP 611
           P+LRS P  + S CP
Sbjct: 467 PVLRSPPAFSHSRCP 481



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -3

Query: 302 WSQ*RLALYQLFLNADTFAVLIVNRVKATDGPVSVHIRAIVDLKIN 165
           W    + L +LFL   T AVL+         P     R  +D K N
Sbjct: 511 WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAPTLYDDRVPIDKKFN 556


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 655 PLLRSQPGATTSTCP 611
           P+LRS P  + S CP
Sbjct: 467 PVLRSPPAFSHSRCP 481



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -3

Query: 302 WSQ*RLALYQLFLNADTFAVLIVNRVKATDGPVSVHIRAIVDLKIN 165
           W    + L +LFL   T AVL+         P     R  +D K N
Sbjct: 511 WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAPTLYDDRVPIDKKFN 556


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 260 HSRITGIKQDAIATKITLLFRTLNY 334
           H+RIT +   ++   + LLF   NY
Sbjct: 604 HNRITELSPLSVPDSVELLFINNNY 628


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 606 WKVVWTIT 583
           WK+ WTIT
Sbjct: 491 WKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 606 WKVVWTIT 583
           WK+ WTIT
Sbjct: 544 WKICWTIT 551


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,511
Number of Sequences: 438
Number of extensions: 3977
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)