Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1982
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 1.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 3.3
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 5.7
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 25 7.6
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 25 7.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 7.6
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 10.0
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 10.0
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 10.0
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/71 (18%), Positives = 33/71 (46%)
Frame = +2
Query: 158 TRHVQELTGNYQHIVSVQRFKTPPGGSVQQSDHLLNLDLSHNKIFDLATRTFSTLVRLEI 337
+RH++E+TG + ++ V + L+ +D S+ +I D + ++ +
Sbjct: 453 SRHLEEITGRFPDVIEVAQLALKHSCDFIIEGELVAIDKSNGQILDFQKLSTRERKKVTV 512
Query: 338 LNLCNNQLVFI 370
++ + VF+
Sbjct: 513 ADITIDVCVFV 523
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = -1
Query: 411 RSIRLNKEENSDPSINTS*LLHKFNISSRTNVENVLVAKSKIL 283
+ I LN+E++SD S+N+ L ++ ++ S + EN LV +L
Sbjct: 103 KEISLNEEDDSDDSVNSDKLENEGSVGSSID-ENELVDLDTLL 144
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 128 RSTKRYRGRATRHVQELTGNYQHIVSVQRFKTPPGG-SVQQSDHLLNLDLSHNKIFDLAT 304
+S K +RG ++H + + Q I+ + ++T PG +V + LL+ + + L
Sbjct: 115 KSLKNWRGSESKHTGDFSTMLQDILQRRAYRTFPGAFTVGDVNALLDQLADASSEYVLNF 174
Query: 305 RTFSTLVRLEILNL 346
+ TL+R +N+
Sbjct: 175 LPYLTLIRDTRVNI 188
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 194 VGNCR*VLERVAWHDLDTASLNVNLLQI 111
+ NCR VLE A+H +D++ L L I
Sbjct: 633 IKNCRFVLEDGAYHPVDSSELAFRLATI 660
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 634 TSPRN*S*TRYDSDSIASSCKYLQMAISVPETNS 533
+SP+N + ++SIA S + + A+S PETN+
Sbjct: 29 SSPKNKDSEKRINNSIAESEQVVDSALSNPETNA 62
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 556 SPFANTYNLKLLNLSHNAFRISFVDWWINGHETVDVSHN 672
S + T + K+LN+ N R F W ET+ V+ N
Sbjct: 682 SIWIGTESRKVLNIPLNDLRRMFHQQWDKQRETISVAEN 720
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 164 HVQELTGNYQHIVSVQRFKTPPGGSVQQS 250
H+ L YQ SV++ +TPP S Q+
Sbjct: 539 HLCTLPYTYQPFSSVEKIETPPNNSKNQT 567
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 254 HLLNLDLSHNKIFDLATRTFSTLVRLEILNLCNNQLVFI 370
+L+ D+SH K+ L TLV +E + + N I
Sbjct: 660 NLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSI 698
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 550 PRSPFAN---TYNLKLLNLSHNAFRISFVDWWINGHETVDVSH 669
PR+P + T L NLS N+F S V+W I VD H
Sbjct: 822 PRTPVLDAGITQALSSKNLSKNSFMTSRVNWAIQS-SAVDYLH 863
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 156 PRDTFKNSPAITNISLAFNDLKRLPEEVFNN 248
P K SPA T +S++ ND +PE +N
Sbjct: 93 PSPAVKASPASTKLSVSENDRLSIPEITKDN 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,300
Number of Sequences: 5004
Number of extensions: 52596
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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