Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1982
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    31   0.013
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 212  RFKTPPGGSVQQSDHLLNLDLSHNKIFDLATRTFSTLVRLEILNLCNNQLV 364
            R +   G   ++  HL  L L +N I  +   TF  L  LEIL L  N+LV
Sbjct: 853  RIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLV 903



 Score = 30.3 bits (65), Expect = 0.018
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 227 PGGSVQQSDHLLNLDLSHNKIFD--LATRTFSTLVRLEILNLCNNQLVFID 373
           P G   + + LL L+L+ N++    +   TF  L+RL +LNL  N L  ID
Sbjct: 301 PKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHID 351



 Score = 28.7 bits (61), Expect = 0.054
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 257 LLNLDLSHNKIFDLATRTFSTLVRLEILNLCNNQL 361
           L+ L+LS+N +  +  R F  L  L+IL+L NN +
Sbjct: 337 LIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSI 371



 Score = 26.2 bits (55), Expect = 0.29
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 138 SGIEVVPRDTFKNSPAITNISLAFNDLKRLPEEVF 242
           + ++ +P   F ++  +  I LA+N L+ LP+ +F
Sbjct: 271 NSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIF 305



 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 NLKQVYVQRSGIEVVPRDTFKNSPAITNISLAFNDLKRL 227
           N++ +YV  SGIE +   TF     +  + L  N ++ L
Sbjct: 819 NMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIREL 857



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 233 GSVQQSDHLLNLDLSHNKIFDLATRTFSTLVRLEILNLCNNQLVFIDG 376
           G +    +L  L+L+ NK+  +    F   +RLE + L  N L  I+G
Sbjct: 496 GMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDING 543



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 257 LLNLDLSHNKIFDLATRTFSTLVRLEILNLCNNQL 361
           L  LDL  N+I +    +F  L +L  L L  N +
Sbjct: 456 LKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI 490


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 537 TVVRVHCLLESRLLFANEIDILC 469
           T+V + C++   L+ A+ + ILC
Sbjct: 4   TIVSLLCVIYCALVHADTVAILC 26


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 537 TVVRVHCLLESRLLFANEIDILC 469
           T+V + C++   L+ A+ + ILC
Sbjct: 4   TIVSLLCVIYCALVHADTVAILC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,632
Number of Sequences: 438
Number of extensions: 3194
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)