Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1981
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    25   0.92 
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    23   3.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.5  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 166 KVSFHYILNSFSCGYIYSKCLCSTSELG 83
           K   +  +N   CGYI+S  L S S LG
Sbjct: 38  KTCLNLSINYCICGYIFSAILFSLSILG 65


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 532 CTLVLSEVGQHQLNSHVQSQLESS*IPRLLMTC 434
           CT VLSE   +Q N  + + L+S  + +    C
Sbjct: 12  CTNVLSEEYTNQYNDELDAALKSERLMKSYFEC 44


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 59  AISLLNPKAEFARAAQALAVNISAAKGI 142
           A +++NP A    AAQ L +N+   + I
Sbjct: 190 APTMINPSAICESAAQLLFMNVQWVRSI 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,221
Number of Sequences: 336
Number of extensions: 3407
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)