Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1981
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 97 3e-21
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 50 4e-07
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 48 1e-06
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 46 6e-06
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 43 4e-05
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 42 1e-04
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 39 0.001
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 38 0.002
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 1.3
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 5.4
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.4
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 96.7 bits (230), Expect = 3e-21
Identities = 48/65 (73%), Positives = 54/65 (83%)
Frame = +2
Query: 62 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 241
+SLLNPKAE + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
Query: 242 LHEMQ 256
L EMQ
Sbjct: 62 LTEMQ 66
Score = 78.6 bits (185), Expect = 1e-15
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
IQ+PTAS IA+ LL+GELLKQA+++I EGLHP +I++GF++A+N
Sbjct: 67 IQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKN 126
Query: 436 KSLEVLESMKIPIEIARENLVDVA 507
++L L+S K E+ RE L++VA
Sbjct: 127 EALTFLDSFKTDFEVDREVLLNVA 150
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 50.0 bits (114), Expect = 4e-07
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +2
Query: 119 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQ 256
NI AAK + DV++T LGP+ +KML+ G + +T DG+ +L E++
Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIE 69
Score = 33.9 bits (74), Expect = 0.027
Identities = 14/75 (18%), Positives = 31/75 (41%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
+ HP A + ++L GE+L A + +HP ++ F A
Sbjct: 70 VAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALE 129
Query: 436 KSLEVLESMKIPIEI 480
+L +++ + +P+ +
Sbjct: 130 DALSIIDEITLPVNV 144
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +2
Query: 119 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQSSTLQP 274
NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + S L P
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHL--SVLHP 73
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 46.0 bits (104), Expect = 6e-06
Identities = 19/50 (38%), Positives = 35/50 (70%)
Frame = +2
Query: 107 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQ 256
A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M+
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQME 84
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 119 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLL 244
N+ A I +V+K++LGP G KMLV GD+ +T DG +L
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 67
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/86 (18%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
++HP ++ V++ ELL++A+ + +HP I G+ +A
Sbjct: 72 VEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIR 131
Query: 436 KSLEVL-ESMKIPIE-IARENLVDVA 507
++++ + + + ++ + +E+L++VA
Sbjct: 132 EAVKFMTDVLSCSVDSLGKESLINVA 157
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 110 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLL 244
L NI+A +QD ++T LGP G K++V G++ I+ DG ++
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIM 70
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 262 HPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKS 441
HP A L+ V+ GELL +A+ I GL P I +G+++A + +
Sbjct: 79 HPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHT 138
Query: 442 LEVLESM 462
+EVLE +
Sbjct: 139 MEVLEEI 145
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 352 ELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI 468
ELL+QA+I ++ +HP++I +G+ IA +++ L + I
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSI 142
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 373 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 468
+F+ E + I EGF IAR K +E LE +K+
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 152 MKTNLGPKGTMKMLVSGAGDIKITKDG 232
+ LGPKG ++ G KITKDG
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDG 84
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -3
Query: 223 GDLYVPSTRNQHFHRAFRTKVSFHYILNSFSC 128
G + S RN+ FHR F+ ++++ + C
Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,390
Number of Sequences: 5004
Number of extensions: 54603
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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