Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1981
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 98 8e-21
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 54 1e-07
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 54 2e-07
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 52 4e-07
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 50 2e-06
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 44 1e-04
10_08_0620 - 19321612-19323237 42 4e-04
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 37 0.021
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 36 0.028
03_01_0305 - 2383187-2383298,2383606-2383684,2383762-2383867,238... 33 0.20
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 30 2.4
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 29 4.2
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 29 5.6
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 29 5.6
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271... 28 9.8
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 28 9.8
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 97.9 bits (233), Expect = 8e-21
Identities = 45/66 (68%), Positives = 55/66 (83%)
Frame = +2
Query: 59 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 238
++ +LNP AE + AL +NI+AAKG+QDV+KTNLGPKGT+KMLV GAGDIK+TKDGN
Sbjct: 2 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNT 61
Query: 239 LLHEMQ 256
LL EMQ
Sbjct: 62 LLKEMQ 67
Score = 64.5 bits (150), Expect = 9e-11
Identities = 32/78 (41%), Positives = 44/78 (56%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
IQ+PTA +IAR VL IGEL+KQ++ I EG HPR + +GFD+A+
Sbjct: 68 IQNPTAIMIARTAVAQDDTSGDGTTSTVLFIGELMKQSERCIDEGTHPRFLVDGFDVAKR 127
Query: 436 KSLEVLESMKIPIEIARE 489
+LE LE K + + E
Sbjct: 128 ATLEFLEKFKTSVVMGDE 145
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 54.4 bits (125), Expect = 1e-07
Identities = 22/45 (48%), Positives = 32/45 (71%)
Frame = +2
Query: 119 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEM 253
NI AAK + D+++T LGP+ +KML+ AG I +T DGN +L E+
Sbjct: 26 NIQAAKAVADIIRTTLGPQSMLKMLLDAAGGIVVTNDGNCILREL 70
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
+ HP A + ++L GE+L A FI + HP +I + A +
Sbjct: 72 LAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAQAFIDKNYHPTVICRAYTKALD 131
Query: 436 KSLEVLESMKIPIEI 480
+L VL+ + IP+++
Sbjct: 132 DALSVLDKIAIPVDV 146
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/45 (46%), Positives = 32/45 (71%)
Frame = +2
Query: 119 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEM 253
NI AAK + D+++T LGP+ +KML+ +G I +T DGN +L E+
Sbjct: 26 NIQAAKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILREI 70
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
I HP A + ++L GE+L A+ FI + HP +I + A
Sbjct: 72 IAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKHYHPTVICRAYTKALE 131
Query: 436 KSLEVLESMKIPIEI 480
+L VL+ + + +++
Sbjct: 132 DALAVLDKIAMHVDV 146
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +2
Query: 95 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEM 253
R A NI+A K + +++T+LGPKG KML S GD+ IT DG +L +M
Sbjct: 25 RGLDAQKANIAAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQM 77
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 337 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENL 495
V++ G LL+QA+ + G+HP I EG+++A + + LE + E + N+
Sbjct: 106 VVMAGSLLEQAEKLLERGIHPIRIAEGYELASRIAFDHLEHISHKFEFSATNI 158
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 116 VNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQSSTLQP 274
+NI+AA+ + D ++T+LGP+G KM+ SG ++ IT DG +L M S LQP
Sbjct: 30 LNIAAARAVADAVRTSLGPRGMDKMISSGEQEVIITNDGATILSRM--SLLQP 80
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Frame = +1
Query: 253 AIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIAR 432
++ P A ++A V+L G LL++A +S G HP +
Sbjct: 76 SLLQPAARMLAELSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHRLA 135
Query: 433 NKSLEVLESMKIPIEIA-RENLVDVA--LLHSKL 525
+++EVL +M IPIE++ R++LV A L+SK+
Sbjct: 136 TRAVEVLHAMAIPIELSDRDSLVKSASTALNSKV 169
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
+QHP A ++ + GELL++A+ I GLHP I G+ A N
Sbjct: 73 VQHPAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAEELIRMGLHPSEIIIGYTKAIN 132
Query: 436 KSLEVLESMKIPIEIARENL 495
K++E+LE + +E EN+
Sbjct: 133 KTVEILEDL---VEKGSENM 149
>10_08_0620 - 19321612-19323237
Length = 541
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +1
Query: 337 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIA-RENLVDVA-- 507
V+L G LL++A +S G HP + + +++EVL M IP+E++ R+ LV A
Sbjct: 108 VVLAGSLLRRAQSLLSAGAHPTAAADALHLLAARAVEVLHGMAIPVELSDRDALVKSAST 167
Query: 508 LLHSKL 525
L+SK+
Sbjct: 168 ALNSKV 173
Score = 35.1 bits (77), Expect = 0.064
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +2
Query: 116 VNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GD--IKITKDGNVLLHEMQSSTLQP 274
+NI+A + + +T+LGP+G KM+ S + GD + IT DG +L M LQP
Sbjct: 30 LNIAAGRAVAAAARTSLGPRGMDKMISSSSSGGDQAVIITNDGATILSRM--PLLQP 84
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 36.7 bits (81), Expect = 0.021
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGF----D 423
I +P A ++ V+L GELL++A+ ++ +HP I G+ +
Sbjct: 69 IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAGYRMAVE 128
Query: 424 IARNKSLEVLESMKIPIEIARENLVDVAL--LHSKL 525
ARN LE K I+ R +L+++A+ L SK+
Sbjct: 129 CARNALLERTMDNKENIDKFRSDLMNIAMTTLSSKI 164
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 36.3 bits (80), Expect = 0.028
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
I HP A ++ VLL E LK+A +I +G+HP + + A +
Sbjct: 74 IIHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVHPHSLIRSYRTAGH 133
Query: 436 KSLEVLESMKIPIE 477
++E ++ + IE
Sbjct: 134 LAIEKVKDLATSIE 147
Score = 35.9 bits (79), Expect = 0.037
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 62 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 241
I LL + ++ + NI+A + D ++T LGP+G K++ G I+ DG +
Sbjct: 9 IILLKEGTDTSQGRAQVVSNINACTVVADTVRTTLGPRGMDKLIHDDKGGTTISNDGATI 68
Query: 242 L 244
+
Sbjct: 69 M 69
>03_01_0305 -
2383187-2383298,2383606-2383684,2383762-2383867,
2383941-2384044,2384141-2384240,2384533-2384628,
2384724-2384801,2385355-2385423,2385511-2385591,
2385670-2385759,2385859-2385945,2386022-2386126,
2386591-2386686,2386796-2386971,2387225-2387384,
2387898-2388029,2388236-2388260,2389023-2389174
Length = 615
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 104 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQSS 262
+A A+ + + + D +K +GPKG ++ G K+TKDG + ++ S
Sbjct: 80 EARALMLRGVEELADAVKVTMGPKGRTVVIEQSFGAPKVTKDGVTVAKSIEFS 132
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/60 (21%), Positives = 25/60 (41%)
Frame = +1
Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
++HP A ++ V++ ELLK+ + + +HP I G+ + N
Sbjct: 24 VEHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKRGNDLVRNKIHPTSIISGYRLQYN 83
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 86 EFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 232
E A A A + + D +K +GPKG ++ K+TKDG
Sbjct: 121 EVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDG 169
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 38 NVLNEMAAISLLNPKAEFAR--AAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSG 202
N L +AA+ LNP AR AA A A + A D +T L P+ + K+ +G
Sbjct: 321 NPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIKAAG 377
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 140 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQ 256
+ D++ LGPKG +L S G KI DG + E++
Sbjct: 75 LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVE 113
>11_06_0713 +
26524984-26525276,26526008-26526434,26526550-26527171,
26528059-26528099,26528181-26528249,26528565-26528665,
26529300-26529378,26529955-26530053,26530129-26530197,
26530326-26530375,26530482-26530548,26531031-26531125,
26534469-26534856
Length = 799
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 449 TSNDLLRAMSKPSVMILGCKPSLMNMSACLSSSPMR 342
TS + + +KP V + G K L+N +C S P++
Sbjct: 195 TSGKVYPSSAKPRVQLNGSKSGLLNKVSCDSQQPLQ 230
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 140 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQ 256
+ D++ LGPKG +L S G +I DG + E++
Sbjct: 79 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,350
Number of Sequences: 37544
Number of extensions: 336110
Number of successful extensions: 686
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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