Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1981
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               99   5e-21
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              50   2e-06
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  48   1e-05
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   44   1e-04
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              44   2e-04
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                34   0.11 
SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)                   33   0.27 
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      29   5.7  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 98.7 bits (235), Expect = 5e-21
 Identities = 48/93 (51%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
 Frame = +1

Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
           IQHPTASLIAR                V++IGELLKQAD+++SEGLHPR++TEGF++A+ 
Sbjct: 171 IQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKK 230

Query: 436 KSLEVLESMKIPIEIARENLVDVA--LLHSKLR 528
           K+LEVLE +K+  E+ R+ L++VA   L +K+R
Sbjct: 231 KALEVLEEVKVSREMDRDTLINVAKTSLRTKVR 263



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 36/52 (69%), Positives = 44/52 (84%)
 Frame = +2

Query: 53  MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAG 208
           MAAI  LNPKAE AR+A AL++NI+AA+G+QDV+KTNLGPKGTMK+L    G
Sbjct: 1   MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +2

Query: 119 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 232
           NI+AAK + D ++T+LGPKG  KM+  G GD+ IT DG
Sbjct: 29  NITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDG 66


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/46 (43%), Positives = 32/46 (69%)
 Frame = +2

Query: 119 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQ 256
           +I AA+ +  ++KT+LGPKG  KM+VS  G++ +T DG  +L  M+
Sbjct: 35  HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMME 80


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +2

Query: 62  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GDIKITKDGN 235
           +S+LN  AE  RA  A   +   A  I D++K+ LGPKG  K+L S    G+I++T DG 
Sbjct: 6   VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65

Query: 236 VLL 244
            +L
Sbjct: 66  TIL 68



 Score = 31.5 bits (68), Expect = 0.81
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
 Frame = +1

Query: 256 IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARN 435
           I +P A ++                   +L  ELLK+A+  +S  +HP+ I  G+  +  
Sbjct: 73  IDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVK 132

Query: 436 KSLEVLESMKI----PIEIARENLVDVA--LLHSKLRCIHYINY*LLSV 564
            + + LE+  +      E  RE+L+++A   L SK+   H  ++  L+V
Sbjct: 133 AAEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAV 181


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +2

Query: 62  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 241
           I LL    + ++    L  NI A + I D ++T LGP+G  K++V G G   I+ DG  +
Sbjct: 641 IILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700

Query: 242 LH 247
           ++
Sbjct: 701 IN 702


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 74  NPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 232
           N   E    A+A A  +     + D +   LGPKG   ++    G  KITKDG
Sbjct: 57  NSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDG 109


>SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)
          Length = 651

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 68  LLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLH 247
           +LN  A+F  + + +    S  +G   V +  LG   T  +  +GAG + + K G V+L 
Sbjct: 64  VLNSHAQFCPSLKEMRGESSMIRGYSPVTQAFLGTLFTWAVTAAGAGLVFVFKSGQVMLA 123

Query: 248 EMQSSTLQP 274
               S L P
Sbjct: 124 ASYWSLLNP 132


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 237 FCYMRCNPAPYSLTDCSSVNRSR*CHWRWYNIYC 338
           FC + CN      T C+    +R CH  WY  YC
Sbjct: 706 FCDVNCNSNSSHFT-CNKTTGARVCHSNWYGTYC 738



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 237 FCYMRCNPAPYSLTDCSSVNRSR*CHWRWYNIYC 338
           +C + CN    S   C+    +R CH  WY   C
Sbjct: 737 YCDVYCNSNSSSHFACNKTTGARVCHRDWYGSLC 770



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +3

Query: 240 CYMRCNPAPYSLTDCS-SVNRSR*CHWRWYNIYCPPH 347
           C   C P    L   + SVN S+ CH  WY   C  H
Sbjct: 474 CTRFCKPQDSLLGHYNCSVNGSKVCHREWYGATCDVH 510


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
 Frame = +1

Query: 340 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI----PIEIARENLVDVA 507
           +L  ELLK+A+  +S  +HP+ I  G+  +   + + LE+  +      E  R++L+++A
Sbjct: 19  VLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIA 78

Query: 508 --LLHSKLRCIHYINY*LLSV 564
              L SK+   H  ++  L+V
Sbjct: 79  RTTLSSKILVQHRDHFAKLAV 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,417,593
Number of Sequences: 59808
Number of extensions: 398780
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)