Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1980
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    27   4.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   7.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   7.1  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   7.1  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.4  

>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 582 YAIKYRHFLSNN-NLSIKKFTFTELLEQR 665
           YA+++ H  SNN +L +KK T  E  E++
Sbjct: 26  YAVRFAHHTSNNDDLEVKKNTVYERYERK 54


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 460 YGSSTKLGFSSYDNSASIMIEYDDFKKH*MKKGIINYLYMSMPLNTGIF 606
           Y S  K GF S  NSA     + +F+       I N +  S+ +NT I+
Sbjct: 449 YQSLAKTGFYSGPNSADKKKSFFEFRIRHAAHDIENPILPSLSMNTDIY 497


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 106  LLQNTARRPYLCE*PICIRVNVGYIYVAKAVH*QLSRVHTLTKICIY-DYNTNKGHARSY 282
            LLQ   + P L   PI +++    I   K+VH  L          +Y D  TN G A S 
Sbjct: 1432 LLQKNLKNPILLNLPISVKIEEISINYFKSVHLNLLTAVFCNMAKLYADAKTN-GFASSQ 1490

Query: 283  FATTIQ*YYRIGLFNVLKTTPE 348
            +  ++  +Y   L + ++ + E
Sbjct: 1491 YLQSLFIHYLSSLLSSMQHSYE 1512


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 322 FNVL-KTTPELIDLNPTSPSKYKRREKAEMS*LAFWAKRL 438
           FN L KT  E++DL   +   YKR+     +  A WA+ L
Sbjct: 451 FNTLHKTVLEMLDLQRQAEHYYKRKLDNAKAINALWAENL 490


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 65  EDRLIYNNLKFVYSCCKILRAALICVSDQS 154
           +++ +  N++ VY+CC  LR  +I VS ++
Sbjct: 290 QEKDVDGNVERVYACCAALRHFMIPVSSRA 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,540
Number of Sequences: 5004
Number of extensions: 63206
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)