Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1980
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    30   2.2  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    28   8.8  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    28   8.8  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    28   8.8  
AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine re...    28   8.8  

>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 273 RVAFICIVIVNTNFR*CVYPTKLSVDSFSYIYVAHIDTY 157
           R+  I +V++N   + C +PT    ++  Y+Y+ HI  Y
Sbjct: 209 RILIISLVMLNILKKICSHPTGKLFETSEYLYIVHILVY 247


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 591  KYRHFLSNNNLSIKKFTFTELLEQRECHKRLFD 689
            +Y+H L+   L ++K      + ++E +K LFD
Sbjct: 1796 EYKHLLTQELLKVQKIAKEHAMREQESYKSLFD 1828


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 591  KYRHFLSNNNLSIKKFTFTELLEQRECHKRLFD 689
            +Y+H L+   L ++K      + ++E +K LFD
Sbjct: 1699 EYKHLLTQELLKVQKIAKEHAMREQESYKSLFD 1731


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 591  KYRHFLSNNNLSIKKFTFTELLEQRECHKRLFD 689
            +Y+H L+   L ++K      + ++E +K LFD
Sbjct: 1710 EYKHLLTQELLKVQKIAKEHAMREQESYKSLFD 1742


>AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine
           receptor, class t protein59 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 111 AKYCAPPLFV*VTNLYTCQCGLHICS*SCPLTA*SGTHTNENLYLRLQY 257
           A +C+ P F+ V     C C +  CS    L A   +  N NL +R  +
Sbjct: 236 ATFCSYPRFIYVAGAIGCGCWMGSCSTCILLAANRCSDINHNLPIRKMF 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,321
Number of Sequences: 27780
Number of extensions: 343024
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)