Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1979
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 33 0.037
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.46
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 28 1.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 3.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 3.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 4.3
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 25 7.5
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 25 9.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.9
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 33.1 bits (72), Expect = 0.037
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Frame = +3
Query: 255 SEDG-YSENEKRLLDKVR-KRKHESD-SEEEMYAFXXXXXXXXQKDDLGIADSD-VEGQE 422
SED Y+ +K L D ++ E + S+EE+ A + +++++ + G++
Sbjct: 40 SEDEFYNAQDKILFDADNGEQADELELSDEELVALESSSDEEDGNAEENLSENEELSGKK 99
Query: 423 K---SDDDLPDSKAWGKNKQSYYATDYVDKD 506
K ++++L D+K WG++ +SYY D D +
Sbjct: 100 KDAVNEEELYDNKGWGRSAKSYYGGDDYDNE 130
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.5 bits (63), Expect = 0.46
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = -2
Query: 480 SMIVYFCPKLLNQVSHRLIFPVLQHHCLLFPNHP------FDLIPRQNQRKHTFPLHYQT 319
S+ V+ L+N S+ +F H C LF HP + P++ +FPL Q
Sbjct: 37 SLAVFPSIPLINTHSNLCLFSNFSHSCFLFCTHPDTLPTSLSINPKKLSLSFSFPLS-QK 95
Query: 318 HVFSYVLYPIIAFHFQNNHLLI*RGIILF 232
F L+P F + L + R ++LF
Sbjct: 96 RPFPNFLHP-----FTGSELSLFRCLLLF 119
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 255 SEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDD 434
+ G SE++ + + K+K S +E E F + D+L A+S+ E E+S
Sbjct: 44 TSSGSSESDS--MSQNDKKKDSSLNESEDEDFAGFGESASENDELESAESEAENDEESSS 101
Query: 435 DLPDSK 452
+SK
Sbjct: 102 QKSNSK 107
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 294 DKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADS--DVEGQEKSDDDLPDSKAWGKN 467
DKVR + DSE+ A D+ ++D+ DVE + + D +S+ K+
Sbjct: 1286 DKVRAHVLDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEVGSKD 1345
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +1
Query: 250 SDQKMVILKMKSDYWIK-----YVRENMSLIVKRKCMLSLILTRNQIKR 381
S ++ +K+D +I YV+EN+ + K + LI TRN +KR
Sbjct: 993 SSNPNIVNLIKNDVYISPNGYAYVKENVRKSLLAKMLEELIETRNMVKR 1041
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 273 ENEKRLLDKVRKRKHESDSEEE 338
E EKR+L++ RKR+ + D EEE
Sbjct: 696 EEEKRILEE-RKRREKLDKEEE 716
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 181 DIDVMADKIRINSRFDQKENYAPSDQKMV 267
DID RI R ++KE PS Q+++
Sbjct: 16 DIDPNDKVSRIKERVEEKEGIPPSQQRLI 44
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 259 KMVILKMKSDYWIKYVRENMSLIVKRKCMLSLILTRNQIKRM 384
K + + D++ KYV EN+++I + L L L IK +
Sbjct: 208 KASTMSLTDDFYNKYVLENLNIINNLQIFLHLDLEPLHIKSL 249
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 237 ELCPFRSEDGYSENEKRLLDKVRKRKHESDSEEE 338
EL +E G + +EK+ + V + E++SEEE
Sbjct: 46 ELAKLSNELGDAIDEKKFMSFVSNKLRETESEEE 79
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 252 RSEDGYSENEKRLLDKVRKRKHESDSEE 335
+ +D Y+E +L++ VRK+ E + E
Sbjct: 561 KDDDNYNEELDKLVEDVRKKLQEKEEAE 588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,391
Number of Sequences: 5004
Number of extensions: 41643
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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