Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1979
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 32 0.36
11_06_0710 - 26492093-26493460 31 1.1
03_02_0715 + 10621789-10623243,10624074-10625018 31 1.1
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 30 1.5
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 29 3.4
12_01_0223 + 1708420-1708512,1708790-1709008,1709117-1709330,170... 29 4.5
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 28 5.9
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 5.9
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +3
Query: 258 EDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDDD 437
E+G SE+E +D K + EEE A + D++ E + K +++
Sbjct: 65 EEGASESEGEAMDVEAKESADEKEEEEAEAEADGDEGEDKSDEMDAEAGAAEEEAKEEEE 124
Query: 438 LPDSKAWGKNKQS 476
L D++ G+ S
Sbjct: 125 LKDAEVEGEGAGS 137
>11_06_0710 - 26492093-26493460
Length = 455
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +3
Query: 255 SEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDD 434
++DG E+EK+ K +K K +S +++ A DD + + K+ D
Sbjct: 126 TDDGEDESEKKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPD 185
Query: 435 DLPDSKAWGKNKQS 476
D D K K K S
Sbjct: 186 DDEDDKKKSKKKSS 199
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 246 PFRS-EDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQE 422
P +S E+G + + R+RK+E D + Y+ +DL + D+E +E
Sbjct: 82 PVKSRENGRKGKADPPVARSRRRKYEDDDD---YSEEEDDRVDEYGEDLEEEEEDLEEEE 138
Query: 423 KSDDDLPDSKAWGK 464
+ DD+ P SK K
Sbjct: 139 EEDDEAPRSKRMKK 152
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 429 LIFPVLQHHCLLFPNHPFDLIPRQNQRKHTFPL 331
L++P+ H L P+HP IP R H PL
Sbjct: 7 LLYPLPSHLLPLLPSHPLVRIPSSTSRAHLPPL 39
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 393 IADSDVEGQEKSDDDLPDSKAWGKNKQSYY 482
IA D + ++ +DD D +WG+ K +YY
Sbjct: 93 IAGGD-DSMDEHEDDHKDKNSWGRGKNAYY 121
>12_01_0223 +
1708420-1708512,1708790-1709008,1709117-1709330,
1709901-1710001
Length = 208
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +3
Query: 246 PFRSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEK 425
PF S+ ++ E+RL K KR DS ++ + +AD DVE QE
Sbjct: 139 PFASD---AQFERRLGAK-SKRDDGGDSGDDGIEMKVEQPTGNIGEVYKLADLDVETQES 194
Query: 426 SDDDLPDSKAW 458
DDD D W
Sbjct: 195 IDDDDDDDLVW 205
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 402 SDVEGQEKSDDDLPDSKAWGKN 467
S V G E DDD PDSK W ++
Sbjct: 338 SSVGGGEDLDDDEPDSKRWRRD 359
>03_03_0186 + 15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/70 (21%), Positives = 29/70 (41%)
Frame = +3
Query: 294 DKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDDDLPDSKAWGKNKQ 473
D V + K E D+ + M + +D+ + + V+G + + + + KNK
Sbjct: 1498 DAVMRNKMEEDTIDTMQEENKMDGKNPEANDMAMEEKTVDGDDDPKNKMEEGNTEAKNKM 1557
Query: 474 SYYATDYVDK 503
T+ DK
Sbjct: 1558 EEGNTEAKDK 1567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,079,942
Number of Sequences: 37544
Number of extensions: 220450
Number of successful extensions: 659
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -